Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2454g00002 ATGTCTGATGTGGAAGAGTATCGCTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAATTAAAGGATACATTTGAAAAGTTCGGCAAGCTTGTTGAGGCAAAGGTTGTTGTTGACAAATTCTCTGGGCGTTCACGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGAGGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGGACTATTACTGTTGATAGAGCCCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACCGGGAGCGTGGTCGTGATCGTGATCGTAACCGAGATTATGGAGGTGGAGGGGGCCGAGGATCTAATGGTGGTGAATGCTTTAAATGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTGGTGAAGGGTCCAGGGGTGGCGGAAGGTATGGTGGTAGGGAAAGTAGATATGGTGGAAGTGGTGGTGGTGGTGGTGGTGGTAGTCACTATGGTCCAGATAGAAATGCAGATCGTTCTTCAGGGGGCCGCAACAGGGATGGCGGTAGTCATGGAGATTCCGGAAATGATCGATATCATCGTGATCGTGCAGGACCGTATGAGCGAGAGCGACGGGGATCGGGAGGCTTTCGCTGA 645 0.4884 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRNRDYGGGGGRGSNGGECFKCGKPGHFARECPGEGSRGGGRYGGRESRYGGSGGGGGGGSHYGPDRNADRSSGGRNRDGGSHGDSGNDRYHRDRAGPYERERRGSGGFR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2454g00002 214 MobiDBLite consensus disorder prediction 88 111 - -
Vium2454g00002 214 CDD RRM2_NsCP33_like 8 83 - -
Vium2454g00002 214 MobiDBLite consensus disorder prediction 173 214 - -
Vium2454g00002 214 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 208 - -
Vium2454g00002 214 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Vium2454g00002 214 MobiDBLite consensus disorder prediction 76 214 - -
Vium2454g00002 214 Gene3D - 2 117 IPR012677 -
Vium2454g00002 214 FunFam Glycine-rich RNA-binding protein RZ1A 1 118 - -
Vium2454g00002 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vium2454g00002 214 SUPERFAMILY Retrovirus zinc finger-like domains 114 140 IPR036875 GO:0003676|GO:0008270
Vium2454g00002 214 Gene3D - 118 182 - -
Vium2454g00002 214 ProSiteProfiles Zinc finger CCHC-type profile. 123 137 IPR001878 GO:0003676|GO:0008270
Vium2454g00002 214 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vium2454g00002 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Vium2454g00002 214 Pfam Zinc knuckle 122 137 IPR001878 GO:0003676|GO:0008270
Vium2454g00002 214 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2454g00002 Vium-Chr2454 16397 18623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2454g00002 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 38.158 5.14e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2454g00002 - - gmx:100815224 300.441