Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2446g00017 ATGAGGATGGGGATGGAGACGAGAATGATGATGGCCATGGTTGTTCTCATGTTCCTTCTGCAGATGGTGGCATCATCGGATCTCCGACCTGGGTTTTATTCAGAAACATGTCCAAACGCAGAAGTTATAGTACGAGATGTGATGAAAAGGGCCCTTGCGGTGGAACCCAGAAGTGTTGCCTCCGTTATGCGGTTCCAGTTCCATGACTGTTTTGTGAATGGGTGTGACGCCTCCATGCTGCTTGATGATACACCCACCATGGTTGGGGAGAAGCTTGCTCTCTCCAACATAAACTCCCTGAGATCATTTGAAGTTGTCGATCAAGTTAAGGAAGCCCTAGAGAACGCATGCCCAGGTGTTGTCTCCTGTGCTGACATCATTATCATGGCATCCCGAGATGCTGTCGCTCTGACAGGTGGACCCGATTGGGAGGTGAGGTTGGGAAGATTGGACAGCTTGAGTGCTAGTCAAGAAGACTCAAACGAAATAATGCCGAGTCCAAGAGCCAATGCGTCTGCTCTTATCGATCTGTTTCAGAAGTACAATCTGACTGTGAAAGACCTTGTTGCACTCTCAGGGTCTCACTCCATTGGTCAAGGTCGGTGCTTCTCCATCATGTTTAGGCTGTACAATCAATCTGGAACTGGAAGGCCTGACCCTGCCATTGAGGCTGGCTATAGGGAAGAGCTTGAGAGACTTTGTCCGCTGGATGTTGATCAGAATGTGACAGGGAACCTTGACTTTACGCCTCTTGTGTTTGATAATCAGTATTTCAAGGACTTGGTTGCTGGGAGAGGGTTTCTCAACTCTGATCAAACACTTTTCACATTCCCACAGACAAGGGAGTTTGTCAGATTCTTCAGTACAAATCAAGGTCAATTTTTCAAAGCCTTTGTGGAAGGAATGCTTAAAATGGGTGACTTGCTGTCTGGTCGACCTGGGGAAGTTAGGACCAATTGCAGAGTCGTCAATGCTCGCCCTGCTCATTTGCTCTTTGAGTCTCAACACAACCTCCTCAGTAATAATAAATCAATTTACGATATGTAA 1047 0.4699 MRMGMETRMMMAMVVLMFLLQMVASSDLRPGFYSETCPNAEVIVRDVMKRALAVEPRSVASVMRFQFHDCFVNGCDASMLLDDTPTMVGEKLALSNINSLRSFEVVDQVKEALENACPGVVSCADIIIMASRDAVALTGGPDWEVRLGRLDSLSASQEDSNEIMPSPRANASALIDLFQKYNLTVKDLVALSGSHSIGQGRCFSIMFRLYNQSGTGRPDPAIEAGYREELERLCPLDVDQNVTGNLDFTPLVFDNQYFKDLVAGRGFLNSDQTLFTFPQTREFVRFFSTNQGQFFKAFVEGMLKMGDLLSGRPGEVRTNCRVVNARPAHLLFESQHNLLSNNKSIYDM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2446g00017 348 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 ProSiteProfiles Plant heme peroxidase family profile. 27 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 FunFam Peroxidase 165 305 - -
Vium2446g00017 348 PANTHER PEROXIDASE 72-RELATED 20 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vium2446g00017 348 CDD secretory_peroxidase 28 323 IPR033905 GO:0004601|GO:0042744
Vium2446g00017 348 Gene3D - 31 324 - -
Vium2446g00017 348 FunFam Peroxidase 31 173 - -
Vium2446g00017 348 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 SUPERFAMILY Heme-dependent peroxidases 28 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium2446g00017 348 Gene3D Peroxidase, domain 2 165 305 - -
Vium2446g00017 348 Pfam Peroxidase 44 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2446g00017 Vium-Chr2446 104477 106204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2446g00017 13 334 Peroxidase AT2G22420 72.981 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2446g00017 K00430 - gmx:100796737 566.229