LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2442g00012	ATGAATTTCCCATCAAAAAATTATTTAGCACTCCCATCAATTTGGCTCTCCTATTTTTTACTCCTTTCCTTTGTTCTCATTACGTGTTGCCAAGTTGAGGCTACAGATGGAGACAGTAAAGTCATATCTGTAGGTGCAGTAATTGATGTTAACTCCCGCATTGGGAAAGAACAGCTTGTAGCTATGGAACTTGCAGCTCAAAGTTATAATACCACTTCTGACACCTACAAGCTTCTTCTTCAATTTCAGCTACCCACCAAGGATCCCTTCATACCCACTTCCCTTGCTAGAAGAATGATTAAAACGCAGAAGATGCAAGTGATTATAGGGATGCAGACGTGGACAGAAGCAGCTTCAGTGGCTGAATTAGGACGCAAATCTCAAGTTCCTGTCCTATCCTTTGCAGCTCCTTCCATAAGCCCATCATCGATGCCAATTCGCTGGCCTTCCTTGGTAAGAATGGCTCACAATGGCACTGCATATGCAAAATGTGTTGCAGATATGGTGCATGCTTTTAGTTGGCAGAGAGTAGTAGTGATTTATGAAGATGGAGACTATGAGATGCTAACACTGCTATCAGAGACCCTCCAAGACGTTGGTTCACTGATCGAGTATCGTTTGGCTCTTCCATCTCCTTCTTATCTTTCTAATCCTAGAGAATTCATTCGCCGAGAGTTAATCAAGGTGATTGAAAATACACAGTCTAGGGTGTTCATTGTTCTGCAATCATCATTAGAAATGGTGATTCATTTGTTCAGAGAAGCTTCAGAAATGGGACTTGTGGACAGAGAATCAGCTTGGATAATACCAGAGAGCACAACTAATTTGCTTGATTCTGTCAACAAGTCTGCTATTTCCTACATGCAAGGAGCTTTAGGAATCAAGACCTACTACTCTGAACGTAGCAGTGAATATAAAAATTTTGAGGCTCGGTTCAGGAAATCTTTTCGTGCCAGGTATCCTGAGGAGGATAACAGCAACCCGGGATTCTATGCTCTGCAAGCACATGATAGCATTAAAATTGTTGCACAAGCAATAGATAAAATGGCGAGTGGCAGAAAGAGTCTGCTAAGAGAAATACTTTCTAGCAATTTCGTTGGCTTAAGTGGAGAAATTCGATTCGAAGAAGCGCAACTCTTGCAGAATCCCACTTTCAGGATTGTTAATGTAGATACAAAGAGTTACAGAGAGTTAGACTTTTGGACTCCAGAAGGTGGGTTCATGAGTAGCCTTCCTACAGAACAAGGCTCAGAGAGTGTTTCTAGGAACACAGAAGGTTTAAGTGGCATTGTAATATGGCCAGGGAAACTAACAAGAATTCCAAAGGGCTGGAATCTGCCTACTAAACAAAAACCAATGAGAATAGCGGTTCCCGGAAGAACCTCCTTTTCCAAGTTTATCAAGGTTGATCATGACAAGCTTACAAATTCATCTAAATACACCGGATTCTGCATTGAAATTTTTGAGAAGGCGTTACCCCTATTGGGATATGACCTGCCATATGACTTCCATCCCGTGAATGTAACCTATCCTAATCTGGTTCAACTGGTCTATAACAAGACTTATGATGCTGTTGTTGGAGACGTGACGATATTAGAAGAAAGATTGCGATATGTAGATTTTACGGTGCCATATGCAGAATCGGGGTTGTCGATGATAGTTACGGAGAAGTCGGAAGATTCGACATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGTGGCAACTGGTGCCTTGTTGCTGTACACAATGGTAGTTGTTTGGTGCCTGGAGCGGAAACCCAATCCAGAGTTTCATGGCAATTTGAAAAGCCAGATCAGCACTGCGCTTATGTTTACCTTCTCCTCTCTATTTTTCGCTCATAGGGAGAAAATTTATAGTGACTTAACTCGAGTAGTTATGGTATCATGGCTGTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCCATGCTCACAGTTCAACGACTGCGACCAAATGTGACTGATATTGAGTTCCTGAAGAAGAACAATATGAAAATTGGTTGTGACGGTGACTCGTTTGTCAAGACATACCTAGAGGAAGTCGAAGACTTCAAGCCAGAGAACATCGTACACATTAATAATGAATATAGTTATGATGGTGCATTCAAAAATAACTCAATAGCAGCTGCTTTTCTCGAACTACCCTATGAAAAAGTATATATGAGTAAATATTGCAAGGGATACTCTGCCTTTGTACCTACCACCAAATTCGGAGATGTTCCAGAAAGCCTCCCCAGTGGCCAGAGACTTTTCCAGAGCTATACTGAGGCTCTTAGAGCAGGGAGTCATAAAGAAGTTAGAAGACAAATGGTTGAACTCTGCAGATGA	2367	0.4157	MNFPSKNYLALPSIWLSYFLLLSFVLITCCQVEATDGDSKVISVGAVIDVNSRIGKEQLVAMELAAQSYNTTSDTYKLLLQFQLPTKDPFIPTSLARRMIKTQKMQVIIGMQTWTEAASVAELGRKSQVPVLSFAAPSISPSSMPIRWPSLVRMAHNGTAYAKCVADMVHAFSWQRVVVIYEDGDYEMLTLLSETLQDVGSLIEYRLALPSPSYLSNPREFIRRELIKVIENTQSRVFIVLQSSLEMVIHLFREASEMGLVDRESAWIIPESTTNLLDSVNKSAISYMQGALGIKTYYSERSSEYKNFEARFRKSFRARYPEEDNSNPGFYALQAHDSIKIVAQAIDKMASGRKSLLREILSSNFVGLSGEIRFEEAQLLQNPTFRIVNVDTKSYRELDFWTPEGGFMSSLPTEQGSESVSRNTEGLSGIVIWPGKLTRIPKGWNLPTKQKPMRIAVPGRTSFSKFIKVDHDKLTNSSKYTGFCIEIFEKALPLLGYDLPYDFHPVNVTYPNLVQLVYNKTYDAVVGDVTILEERLRYVDFTVPYAESGLSMIVTEKSEDSTWMFMKPFTWQMWVATGALLLYTMVVVWCLERKPNPEFHGNLKSQISTALMFTFSSLFFAHREKIYSDLTRVVMVSWLFLVLILNSSYTASLSSMLTVQRLRPNVTDIEFLKKNNMKIGCDGDSFVKTYLEEVEDFKPENIVHINNEYSYDGAFKNNSIAAAFLELPYEKVYMSKYCKGYSAFVPTTKFGDVPESLPSGQRLFQSYTEALRAGSHKEVRRQMVELCR	788

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2442g00012	788	FunFam	Glutamate receptor	562	692	-	-
	Vium2442g00012	788	SMART	GluR_14	454	679	IPR001320	GO:0015276\|GO:0016020
	Vium2442g00012	788	FunFam	Glutamate receptor	452	563	-	-
	Vium2442g00012	788	FunFam	Glutamate receptor	161	326	-	-
	Vium2442g00012	788	CDD	PBP1_GABAb_receptor_plant	43	411	IPR044440	-
	Vium2442g00012	788	Gene3D	-	461	561	-	-
	Vium2442g00012	788	Pfam	Ligand-gated ion channel	570	685	IPR001320	GO:0015276\|GO:0016020
	Vium2442g00012	788	SUPERFAMILY	Periplasmic binding protein-like II	429	745	-	-
	Vium2442g00012	788	Gene3D	-	159	327	-	-
	Vium2442g00012	788	Gene3D	-	562	695	-	-
	Vium2442g00012	788	SUPERFAMILY	Periplasmic binding protein-like I	39	444	IPR028082	-
	Vium2442g00012	788	PIRSF	IGluLR_plant	13	355	IPR017103	-
	Vium2442g00012	788	PIRSF	IGluLR_plant	349	751	IPR017103	-
	Vium2442g00012	788	Pfam	Receptor family ligand binding region	60	391	IPR001828	-
	Vium2442g00012	788	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	43	744	IPR015683	-
	Vium2442g00012	788	Pfam	Bacterial extracellular solute-binding proteins, family 3	477	737	IPR001638	-
	Vium2442g00012	788	Gene3D	-	339	456	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2442g00012	Vium-Chr2442	83769	87147	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2442g00012	15	749	Ion Channels	AT2G29120	33.247	6.23e-124	393

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2442g00012	-		-	gmx:100780320	1212.21