Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2442g00011 ATGAATTTCCCATCAAAAAATTATTTAGCACTCCCATCAATTTGGCTCTCCTATTTTTTACTCCTTTCCTTTGTTCTCATTACGTGTTGCCAAGTTGAGGCTACAGATGGAGACAGTAAAGTCATATCTGTAGGTGCAGTAATTGATGTTAACTCCCGCATTGGGAAAGAACAGCTTGTAGCTATGGAACTTGCAGCTCAAAGTTATAATACCACTTCTGACACCTACAAGCTTCTTCTTCAATTTCAGCTACCCACCAAGGATCCCTTCATACCCACTTCCCTTGCTAGAAGAATGATTAAAACGCAGAAGATGCAAGTGATTATAGGGATGCAGACGTGGACAGAAGCAGCTTCAGTGGCTGAATTAGGACGCAAATCTCAAGTTCCTGTCCTATCCTTTGCAGCTCCTTCCATAAGCCCATCATCGATGCCAATTCGCTGGCCTTCCTTGGTAAGAATGGCTCACAATGGCACTGCATATGCAAAATGTGTTGCAGATATGGTGCATGCTTTTAGTTGGCAGAGAGTAGTAGTGATTTATGAAGATGGAGACTATGAGATGCTAACACTGCTATCAGAGACCCTCCAAGACGTTGGTTCACTGATCGAGTATCGTTTGGCTCTTCCATCTCCTTCTTATCTTTCTAATCCTAGAGAATTCATTCGCCGAGAGTTAATCAAGGTGATTGAAAATACACAGTCTAGGGTGTTCATTGTTCTGCAATCATCATTAGAAATGGTGATTCATTTGTTCAGAGAAGCTTCAGAAATGGGACTTGTGGACAGAGAATCAGCTTGGATAATACCAGAGAGCACAACTAATTTGCTTGATTCTGTCAACAAGTCTGCTATTTCCTACATGCAAGGAGCTTTAGGAATCAAGACCTACTACTCTGAACGTAGCAGTGAATATAAAAATTTTGAGGCTCGGTTCAGGAAATCTTTTCGTGCCAGGTATCCTGAGGAGGATAACAGCAACCCGGGATTCTATGCTCTGCAAGCACATGATAGCATTAAAATTGTTGCACAAGCAATAGATAAAATGGCGAGTGGCAGAAAGAGTCTGCTAAGAGAAATACTTTCTAGCAATTTCGTTGGCTTAAGTGGAGAAATTCGATTCGAAGAAGCGCAACTCTTGCAGAATCCCACTTTCAGGATTGTTAATGTAGATACAAAGAGTTACAGAGAGTTAGACTTTTGGACTCCAGAAGGTGGGTTCATGAGTAGCCTTCCTACAGAACAAGGCTCAGAGAGTGTTTCTAGGAACACAGAAGGTTTAAGTGGCATTGTAATATGGCCAGGGAAACTAACAAGAATTCCAAAGGGCTGGAATCTGCCTACTAAACAAAAACCAATGAGAATAGCGGTTCCCGGAAGAACCTCCTTTTCCAAGTTTATCAAGGTTGATCATGACAAGCTTACAAATTCATCTAAATACACCGGATTCTGCATTGAAATTTTTGAGAAGGCGTTACCCCTATTGGGATATGACCTGCCATATGACTTCCATCCCGTGAATGTAACCTATCCTAATCTGGTTCAACTGGTCTATAACAAGACTTATGATGCTGTTGTTGGAGACGTGACGATATTAGAAGAAAGATTGCGATATGTAGATTTTACGGTGCCATATGCAGAATCGGGGTTGTCGATGATAGTTACGGAGAAGTCGGAAGATTCGACATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGTGGCAACTGGTGCCTTGTTGCTGTACACAATGGTAGTTGTTTGGTGCCTGGAGCGGAAACCCAATCCAGAGTTTCATGGCAATTTGAAAAGCCAGATCAGCACTGCGCTTATGTTTACCTTCTCCTCTCTATTTTTCGCTCATAGGGAGAAAATTTATAGTGACTTAACTCGAGTAGTTATGGTATCATGGCTGTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCCATGCTCACAGTTCAACGACTGCGACCAAATGTGACTGATATTGAGTTCCTGAAGAAGAACAATATGAAAATTGGTTGTGACGGTGACTCGTTTGTCAAGACATACCTAGAGGAAGTCGAAGACTTCAAGCCAGAGAACATCGTACACATTAATAATGAATATAGTTATGATGGTGCATTCAAAAATAACTCAATAGCAGCTGCTTTTCTCGAACTACCCTATGAAAAAGTATATATGAGTAAATATTGCAAGGGATACTCTGCCTTTGTACCTACCACCAAATTCGGAGGTCTGGGATTTATGTTCCAGAAAGCCTCCCCAGTGGCCAGAGACTTTTCCAGAGCTATACTGAGGCTCTTAGAGCAGGGAGTCATAAAGAAGTTAGAAGACAAATGGTTGAACTCTGCAGATGAGTGCTCAAACAATTCGACCTCCAAGAGTTCAGAAAGTTTGACGCTTGGAAGTTTCTGGGTTCTGTACGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTACTCTACACCATCCAGTCGCGGAAATCCAGTCACACATCCCAAGATGAGGCAGAAGAACGTAACGGCAACCTTAGTGATGAAAGCCGATGGAAAAGGATATTTGTTATAGCCAGGCAGATCTACACCAGAAAGCATGCACCACTCACACACGACCATCAGCAGGCTATGGCTCCACAATTACCAGATATCATAATGGTGTCTTCCCCACCAACGGTTGCTATTCACAACTCTTGA 2715 0.421 MNFPSKNYLALPSIWLSYFLLLSFVLITCCQVEATDGDSKVISVGAVIDVNSRIGKEQLVAMELAAQSYNTTSDTYKLLLQFQLPTKDPFIPTSLARRMIKTQKMQVIIGMQTWTEAASVAELGRKSQVPVLSFAAPSISPSSMPIRWPSLVRMAHNGTAYAKCVADMVHAFSWQRVVVIYEDGDYEMLTLLSETLQDVGSLIEYRLALPSPSYLSNPREFIRRELIKVIENTQSRVFIVLQSSLEMVIHLFREASEMGLVDRESAWIIPESTTNLLDSVNKSAISYMQGALGIKTYYSERSSEYKNFEARFRKSFRARYPEEDNSNPGFYALQAHDSIKIVAQAIDKMASGRKSLLREILSSNFVGLSGEIRFEEAQLLQNPTFRIVNVDTKSYRELDFWTPEGGFMSSLPTEQGSESVSRNTEGLSGIVIWPGKLTRIPKGWNLPTKQKPMRIAVPGRTSFSKFIKVDHDKLTNSSKYTGFCIEIFEKALPLLGYDLPYDFHPVNVTYPNLVQLVYNKTYDAVVGDVTILEERLRYVDFTVPYAESGLSMIVTEKSEDSTWMFMKPFTWQMWVATGALLLYTMVVVWCLERKPNPEFHGNLKSQISTALMFTFSSLFFAHREKIYSDLTRVVMVSWLFLVLILNSSYTASLSSMLTVQRLRPNVTDIEFLKKNNMKIGCDGDSFVKTYLEEVEDFKPENIVHINNEYSYDGAFKNNSIAAAFLELPYEKVYMSKYCKGYSAFVPTTKFGGLGFMFQKASPVARDFSRAILRLLEQGVIKKLEDKWLNSADECSNNSTSKSSESLTLGSFWVLYVISGATSTICFLLYTIQSRKSSHTSQDEAEERNGNLSDESRWKRIFVIARQIYTRKHAPLTHDHQQAMAPQLPDIIMVSSPPTVAIHNS 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2442g00011 904 SUPERFAMILY Periplasmic binding protein-like II 429 789 - -
Vium2442g00011 904 Pfam Ligand-gated ion channel 790 819 IPR001320 GO:0015276|GO:0016020
Vium2442g00011 904 Gene3D - 733 796 - -
Vium2442g00011 904 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 836 IPR015683 -
Vium2442g00011 904 Gene3D - 562 695 - -
Vium2442g00011 904 Gene3D - 159 327 - -
Vium2442g00011 904 Gene3D - 461 561 - -
Vium2442g00011 904 CDD GluR_Plant 451 788 - -
Vium2442g00011 904 PIRSF IGluLR_plant 348 887 IPR017103 -
Vium2442g00011 904 PIRSF IGluLR_plant 13 355 IPR017103 -
Vium2442g00011 904 CDD PBP1_GABAb_receptor_plant 43 411 IPR044440 -
Vium2442g00011 904 FunFam Glutamate receptor 161 326 - -
Vium2442g00011 904 SUPERFAMILY Periplasmic binding protein-like I 39 444 IPR028082 -
Vium2442g00011 904 Pfam Receptor family ligand binding region 60 391 IPR001828 -
Vium2442g00011 904 FunFam Glutamate receptor 562 692 - -
Vium2442g00011 904 FunFam Glutamate receptor 452 563 - -
Vium2442g00011 904 SMART GluR_14 454 790 IPR001320 GO:0015276|GO:0016020
Vium2442g00011 904 Gene3D - 339 456 - -
Vium2442g00011 904 Pfam Bacterial extracellular solute-binding proteins, family 3 477 789 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2442g00011 Vium-Chr2442 83769 87890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2442g00011 15 845 Ion Channels AT2G29120 33.562 5.41e-143 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2442g00011 - - gmx:100780320 1420.6