Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2442g00010 ATGGGTTCAGGTGATTGGTTTAAGACGATAATTAACTCAAGAAAATCAAAAGAAGGAAGGTCAAAGAAAGTAAAGACTAAGATTTATAAAGGGAAAAAGTCCAGCGGTTTAGCAAATGGCATTAAAAGCAAAAATCTAGAGTCAGCTGGAGTTCCAATTGAAACTATTGCTGCAACAAGGATTCAAACAGCATTCCGAGCTTATAAGGCTAGAAAACATTTACGTCGCTTGAGAGGATTCACAAAACTGAGAACCCTGACTCAAGGTTTCTCTGTTCAAAACCAAGCTAGTACAACTATAACTCATCTTCATTCATGGACCAAGATACAGGCTGAGATTAGAGCTCGTCGAATATGTATGGTGACAGAAGACAGGCTCAGACGGAAGAAACTACATTCTCAACTAAAACTAGAGGCCAAGATTCATGACCTTGAGGTGGAATGGAGTGGTGGTTCTGAAACCATGGAGAAAAGCCTTGCAAGGTTACACCTACGAGAAGAAGCATCAGTTAAACGGGAAAGAAGTATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAACTCTACCCAAGGCCTAGGCAATTATGAACTTGGCAAAGCTAGTTGGAGTTGGAGCTGGAAGGACCGTTGGATTGCTGTACGCCCTTGGGAAAGCCGTGCCCCTAGTGTTACCATTAGCCCCAGGAAATATCAAAATAAGCTGTCAAGCAAAGTTAAAAAGGATAAGAAACCATCAACATCAAAACATCCAGTTTCAGTTAAAACTCCTTCAGCTAATGATAAAGGGACTAAACCCTTAGGTATTCCCAAAGGAACTGCTAAAGCTAGAAGAAGATTGTCTTACCCTGCTACAGAGAAAAAAACAGTGCAGGAAGGAAAGCAATGA 885 0.4147 MGSGDWFKTIINSRKSKEGRSKKVKTKIYKGKKSSGLANGIKSKNLESAGVPIETIAATRIQTAFRAYKARKHLRRLRGFTKLRTLTQGFSVQNQASTTITHLHSWTKIQAEIRARRICMVTEDRLRRKKLHSQLKLEAKIHDLEVEWSGGSETMEKSLARLHLREEASVKRERSMAYAFSHQWRANSTQGLGNYELGKASWSWSWKDRWIAVRPWESRAPSVTISPRKYQNKLSSKVKKDKKPSTSKHPVSVKTPSANDKGTKPLGIPKGTAKARRRLSYPATEKKTVQEGKQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2442g00010 294 ProSiteProfiles IQ motif profile. 54 82 IPR000048 GO:0005515
Vium2442g00010 294 SMART iq_5 53 75 IPR000048 GO:0005515
Vium2442g00010 294 PANTHER IQ-DOMAIN 5-RELATED 1 261 - -
Vium2442g00010 294 MobiDBLite consensus disorder prediction 222 294 - -
Vium2442g00010 294 MobiDBLite consensus disorder prediction 279 294 - -
Vium2442g00010 294 Pfam IQ calmodulin-binding motif 57 75 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2442g00010 Vium-Chr2442 57342 62046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2442g00010 1 283 IQD Protein Family AT2G33990 48.592 6.24e-80 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2442g00010 - - gmx:100800675 451.825