Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium243g00003 ATGGATGATCTTTCGTCCAGCCTTCTGTGCCAAGAAAACGATACGTGTTTGGAAGAAGGAGGTGATGAATTAGAATGCCAATTGGTTGGATCACGGCATGATTGTGGGGTTTCGGAGGATGAGTATGTGGGGATTTTGGTTGAGAGAGAGATCGTTCTTGGGTTCAGAAGGGACGAAAGTTTGGTGTTTGGGGACTGGATGAAGCGTGCACGCTTGGAGGCAATCAATTGGATTCTCAAAACAAGAGCAACATTGGGTTTTCGCTTCGAAACGGCTTATTTGTCAGTCACATACTTCGATCGATTTCTTTCTAGACGGTCCATTGATAGTGAAAAGTGGTGGGCAATTCGGTTGCTTTCAATTGCATGTCTCTCTTTGGCTGCAAAGATGGAGGAGTGCAATGTGCCAGAGCTATCAGAGTTCAAATCGGAAGACTATTCCTTTGAGGGAAAAGTGATTCAGAAAATGGAGCTCTTGGTGCTCACCACATTGGAGTGGGAAATGGGTATCATCACTCCCTTTGATTTTCTTTCCTATTTCATCACAAAGTTCTGTAAAGAATCTCCACCAAGTCCTACTTTTTCCAAGACCATGCAACTCATCTTTACCACTATGAAAGAGGTAAATTTAATGGATCAAAAACCATCAGTTATTGCAGCGGCTGCTACATTAGTGGCAATGGATCAAAAAATGACGATGGAGGAGGTGGAGTTGAAGATGAGTTCAATTCCTCAACATAGGCTTCTAGAACCTAAAGATGTATTGGAGTACTACAATCTAATTCAAAGATTACAGGAGGAGGAGACCAAAAGGGACACGCACACGCCAATCGACGTGACTGACAGCTCCAGAGTTACTTCTTCCGCAGCAATGGCAAAGAGAAGAAGACTCACATTCAGTGATGAAGGAAGTAGTCATGGGAAGAAGGGACAGGGCTAG 939 0.4377 MDDLSSSLLCQENDTCLEEGGDELECQLVGSRHDCGVSEDEYVGILVEREIVLGFRRDESLVFGDWMKRARLEAINWILKTRATLGFRFETAYLSVTYFDRFLSRRSIDSEKWWAIRLLSIACLSLAAKMEECNVPELSEFKSEDYSFEGKVIQKMELLVLTTLEWEMGIITPFDFLSYFITKFCKESPPSPTFSKTMQLIFTTMKEVNLMDQKPSVIAAAATLVAMDQKMTMEEVELKMSSIPQHRLLEPKDVLEYYNLIQRLQEEETKRDTHTPIDVTDSSRVTSSAAMAKRRRLTFSDEGSSHGKKGQG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium243g00003 312 Pfam Cyclin, N-terminal domain 69 168 IPR006671 -
Vium243g00003 312 SUPERFAMILY Cyclin-like 154 243 IPR036915 -
Vium243g00003 312 CDD CYCLIN_AtCycD-like_rpt1 70 166 - -
Vium243g00003 312 CDD CYCLIN_AtCycD-like_rpt2 171 261 - -
Vium243g00003 312 Pfam Cyclin, C-terminal domain 171 271 IPR004367 -
Vium243g00003 312 FunFam Cyclin-D5-1 170 258 - -
Vium243g00003 312 FunFam Cyclin-D5-1 66 169 - -
Vium243g00003 312 SMART Cyclin_C_2 171 290 IPR004367 -
Vium243g00003 312 PANTHER CYCLINS 39 262 IPR039361 -
Vium243g00003 312 Gene3D - 67 169 - -
Vium243g00003 312 ProSitePatterns Cyclins signature. 71 102 IPR006671 -
Vium243g00003 312 Gene3D - 170 236 - -
Vium243g00003 312 SUPERFAMILY Cyclin-like 34 168 IPR036915 -
Vium243g00003 312 MobiDBLite consensus disorder prediction 268 312 - -
Vium243g00003 312 SMART cyclin_7 76 162 IPR013763 -
Vium243g00003 312 SMART cyclin_7 175 263 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium243g00003 Vium-Chr243 14029 16342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium243g00003 8 243 Core Cell Cycle Gene Families AT4G37630 38.492 1.20e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium243g00003 K18811 - gmx:100798728 536.954