Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium243g00002 ATGGATGATCTTTCGTCCAGCCTTCTGTGCCAAGAAAACGATACGTGTTTGGAAGAAGGAGGTGATGAATTAGAATGCCAATTGGTTGGATCACGGCATGATTGTGGGGTTTCGGAGGATGAGTATGTGGGGATTTTGGTTGAGAGAGAGATCGTTCTTGGGTTCAGAAGGGACGAAAGTTTGGTGTTTGGGGACTGGATGAAGCGTGCACGCTTGGAGGCAATCAATTGGATTCTCAAAAGTGAAAAGTGGTGGGCAATTCGGTTGCTTTCAATTGCATGTCTCTCTTTGGCTGCAAAGATGGAGGAGTGCAATGTGCCAGAGCTATCAGAGTTCAAATCGGAAGACTATTCCTTTGAGGGAAAAGTGATTCAGAAAATGGAGCTCTTGGTGCTCACCACATTGGAGTGGGAAATGGGTATCATCACTCCCTTTGATTTTCTTTCCTATTTCATCACAAAGTTCTGTAAAGAATCTCCACCAAGTCCTACTTTTTCCAAGACCATGCAACTCATCTTTACCACTATGAAAGAGGTAAATTTAATGGATCAAAAACCATCAGTTATTGCAGCGGCTGCTACATTAGTGGCAATGGATCAAAAAATGACGATGGAGGAGGTGGAGTTGAAGATGAGTTCAATTCCTCAACATAGGCTTCTAGAACCTAAAGATGTATTGGAGTACTACAATCTAATTCAAAGATTACAGGAGGAGGAGACCAAAAGGGACACGCACACGCCAATCGACGTGACTGACAGCTCCAGAGTTACTTCTTCCGCAGCAATGGCAAAGAGAAGAAGACTCACATTCAGTGATGAAGGAAGTAGTCATGGGAAGAAGGGACAGGGCTAG 852 0.4401 MDDLSSSLLCQENDTCLEEGGDELECQLVGSRHDCGVSEDEYVGILVEREIVLGFRRDESLVFGDWMKRARLEAINWILKSEKWWAIRLLSIACLSLAAKMEECNVPELSEFKSEDYSFEGKVIQKMELLVLTTLEWEMGIITPFDFLSYFITKFCKESPPSPTFSKTMQLIFTTMKEVNLMDQKPSVIAAAATLVAMDQKMTMEEVELKMSSIPQHRLLEPKDVLEYYNLIQRLQEEETKRDTHTPIDVTDSSRVTSSAAMAKRRRLTFSDEGSSHGKKGQG 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium243g00002 283 SUPERFAMILY Cyclin-like 34 139 IPR036915 -
Vium243g00002 283 Gene3D - 141 203 - -
Vium243g00002 283 Pfam Cyclin, C-terminal domain 142 242 IPR004367 -
Vium243g00002 283 MobiDBLite consensus disorder prediction 239 283 - -
Vium243g00002 283 Pfam Cyclin, N-terminal domain 87 139 IPR006671 -
Vium243g00002 283 PANTHER CYCLINS 87 233 IPR039361 -
Vium243g00002 283 Gene3D - 82 140 - -
Vium243g00002 283 FunFam Cyclin-D5-1 141 229 - -
Vium243g00002 283 CDD CYCLIN_AtCycD-like_rpt2 142 232 - -
Vium243g00002 283 SMART Cyclin_C_2 142 261 IPR004367 -
Vium243g00002 283 SUPERFAMILY Cyclin-like 125 214 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium243g00002 Vium-Chr243 14029 16345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium243g00002 8 214 Core Cell Cycle Gene Families AT4G37630 32.540 1.31e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium243g00002 K18811 - gmx:100798728 465.307