Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium243g00001 TATACATCACAGGAAAAGTTCAGAGTTGCAGTGTTGGTTTCTCAAGCTGCTCTTCAGTTTATTCATGGTCTAAATTTGTCAACTGAGTACACTGTACCAGAAGAAGTTAAAACCGCGGGCTTTGAAATTTGTGCTGATGAGTTGGGATCGATTGTTGAGGGACGTGATGTGAAAAAGTTGAAAATTCATGGTGGCGTTGAGGGTATCACAAACAAACTAAATACCTCGGTTGATGATGGGATATCAACATCTGAGCACTTGCTCAATCAGAGAAAAGAAATTTATGGAGTTAATAAATTTACTGAAAGTCCAGCTCGTGGATTCTGGGTTTTTGTATGGGAAGCCCTTCAGGATACAACCCTCATGATACTTGCTGTCTGTGCCTTGGTCTCTTTAGTGGTTGGTATAGTAATGGAAGGGTGGCCCAAAGGTGCACAGGATGGAATTGGTATTGTTGCTAGCATATTGCTTGTAGTGTTTGTCACTGCCACAAGTGATTACCGACAATCACTGCAGTTTAAGGATCTAGATAAAGAGAAGAAGAAAATTACAGTTCAGGTAACGAGAAATGGCTGTAGGCAGAAGCTTTCAATATATGATCTGCTTCCTGGTGATATTGTCCATCTAAATATTGGAGATCAGGTACCTGCTGATGGGCTTTTCGTGTGTGGTTTCTCTGTGTTAATAAATGAATCAAGCTTGACGGGGGAAAGTGAACCAGTCAATGTCAATGAACTTAATCCCTTTCTGCTGTCTGGAACCAAAGTCCAAGATGGATCATGCAAGATGCTTGTGACCACTGTTGGAATGAGGACCCAGTGGGGTAAACTAATGGCTACTCTTAGTGAAGGGGGAGATGATGAAACACCTTTACAGGTAAAACTGAATGGTGTTGCTACCATTATTGGGAAAATAGGCCTCTTTTTTGCAGTTGTGACCTTTTCTGTGTTGGTCCAAGGGCTATTTAGCCGCAAGCTGCGAGAAGGATCCCAGTGGACATGGTCTGGTGATGATGCTATGGAAATTGTGGAATTCTTTGCTATTGCTGTTACTATTGTTGTTGTTGCAGTTCCTGAAGGTTTACCTTTAGCAGTAACATTAAGCCTTGCTTTTGCATTGAAAAAGATGATGAATGATAAGGCACTTGTTCGTCACTTGGCTGCTTGTGAGACAATGGGATCTGCAACTACCATTTGCAGTGACAAGACTGGCACACTAACTACTAACTATATGACTGTTGTAAAAGCTTATATATGTGGGAAGATTAAAGAAGTAAACAGTTCTAAGGTCTCTTCTGATTTCTCATCTGATATTCACGATTCTTCTGTAGCAATTCTACTTGAATCAATATTTAACAACACGGGAGGAGAGGTTGTCAAAAACAAAGATGAGAAGATTGAAATTCTGGGGTCGCCAACTGAGACTGCACTTTTAGAATTTGGACTGTCACTTGGTGGTGATTTCCTAAAGGAACGACAAAGGTCAAAACTTGTGAAAGTTGAGCCGTTTAATTCTATAAAGAAGCGCATGGGGGTAGTTTTACAGCTTCCTGATGGTGGTTTCAGAGCACATTGTAAAGGTGCCTCTGAAATAGTTCTAGCTGCATGTGACAAAGTTGTGGACTCAAGGGGCGAGGTTGTTCCACTCAATGAAGACTCCATCAATCACATGAATAATATCATTGAGACATTCGCTGGTGAAGCTCTCCGAACACTTTGCCTTGCTTACAAGGATATTCATGATGAATTTTCTGTTGGAACTCCTATTCCTACTAGTGGTTACTCCTGTATAGGAATTGTGGGTATCAAAGATCCAGTTCGTCCTGGTGTTCGAGAGTCTGTTGCCATTTGTAGGTCAGCTGGTATTGTTGTTAGAATGGTTACTGGAGATAACATAAATACAGCAAAGGCAATTGCTAGAGAATGTGGAATTTTAACGGATGGTATTGCAATTGAAGGCCCTGAGTTTCGTGAGAAGACTGAGGAGGAATTGCTTGACATCATTCCGAAGATTCAGGTAATGGCCCGATCTTCACCAATGGATAAACATACCCTGGTGAAACACTTAAGGACAACATTTCAAGAGGTAGTTTCAGTTACTGGTGATGGAACAAATGATGCTCCAGCACTTCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTGGCAAAAGAAAGTGCTGACGTAATAATTCTAGATGATAATTTTTCCACTATTGTGACCGTAGCCAAATGGGGCCGCTCGGTCTACATAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTTAATGTAGTTGCTTTGATCGTCAATTTCTCTTCTGCCTGTTTGACTGGAAATGCTCCTCTCACTGCTGTTCAACTTCTTTGGGTCAACATGATTATGGACACTCTTGGAGCACTTGCACTTGCCACTGAACCTCCTAACGATGAGTTGATGAAAAGACCACCTGTTGGTAGGAAAGGAAACTTCATCAGTAATGTGATGTGGAGGAATATCTTGGGACAGTCTATATATCAATTTGTCGTAATATGGTTCCTACAGACCAGAGGAAAAGCAGCATTTCATCTTCATGGCCCAGATTCTGATATGACATTGAATACACTTATTTTCAACTCATTCGTATTCTGTCAGGTTTTCAATGAGATTAGCTCCAGAGATATGGAGAGGATAAATGTGTTTGAAGGTATATTGAAGAATTATGTGTTCGTAGCTGTGCTCACTTGCACTGTGGTCTTCCAAATTATTATTGTTGAATTTTTGGGCACCTATGCAAACACATCTCCACTTAGTTTGAAGCAGTGGTTCGGTAGCGTTCTCTTTGGAGTCTTTGGCATGCCAATTGCGGCAGCTCTAAAGATGATCCCCGTGGGATCTGTCTAA 2895 0.4121 YTSQEKFRVAVLVSQAALQFIHGLNLSTEYTVPEEVKTAGFEICADELGSIVEGRDVKKLKIHGGVEGITNKLNTSVDDGISTSEHLLNQRKEIYGVNKFTESPARGFWVFVWEALQDTTLMILAVCALVSLVVGIVMEGWPKGAQDGIGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKITVQVTRNGCRQKLSIYDLLPGDIVHLNIGDQVPADGLFVCGFSVLINESSLTGESEPVNVNELNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLREGSQWTWSGDDAMEIVEFFAIAVTIVVVAVPEGLPLAVTLSLAFALKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNYMTVVKAYICGKIKEVNSSKVSSDFSSDIHDSSVAILLESIFNNTGGEVVKNKDEKIEILGSPTETALLEFGLSLGGDFLKERQRSKLVKVEPFNSIKKRMGVVLQLPDGGFRAHCKGASEIVLAACDKVVDSRGEVVPLNEDSINHMNNIIETFAGEALRTLCLAYKDIHDEFSVGTPIPTSGYSCIGIVGIKDPVRPGVRESVAICRSAGIVVRMVTGDNINTAKAIARECGILTDGIAIEGPEFREKTEEELLDIIPKIQVMARSSPMDKHTLVKHLRTTFQEVVSVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRPPVGRKGNFISNVMWRNILGQSIYQFVVIWFLQTRGKAAFHLHGPDSDMTLNTLIFNSFVFCQVFNEISSRDMERINVFEGILKNYVFVAVLTCTVVFQIIIVEFLGTYANTSPLSLKQWFGSVLFGVFGMPIAAALKMIPVGSV 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium243g00001 964 SUPERFAMILY Calcium ATPase, transmembrane domain M 63 960 IPR023298 -
Vium243g00001 964 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 405 610 IPR023299 GO:0000166
Vium243g00001 964 PRINTS H+-transporting ATPase (proton pump) signature 732 757 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium243g00001 964 PRINTS H+-transporting ATPase (proton pump) signature 700 716 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium243g00001 964 PRINTS H+-transporting ATPase (proton pump) signature 557 575 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium243g00001 964 CDD P-type_ATPase_Ca_PMCA-like 88 833 - -
Vium243g00001 964 FunFam Calcium-transporting ATPase 409 605 - -
Vium243g00001 964 Gene3D - 409 605 IPR023299 GO:0000166
Vium243g00001 964 FunFam Calcium-transporting ATPase 594 745 - -
Vium243g00001 964 PRINTS P-type cation-transporting ATPase superfamily signature 620 630 - -
Vium243g00001 964 PRINTS P-type cation-transporting ATPase superfamily signature 724 736 - -
Vium243g00001 964 PRINTS P-type cation-transporting ATPase superfamily signature 700 719 - -
Vium243g00001 964 PRINTS P-type cation-transporting ATPase superfamily signature 598 609 - -
Vium243g00001 964 PRINTS P-type cation-transporting ATPase superfamily signature 230 244 - -
Vium243g00001 964 PRINTS P-type cation-transporting ATPase superfamily signature 399 413 - -
Vium243g00001 964 FunFam Calcium-transporting ATPase 162 282 - -
Vium243g00001 964 PANTHER CATION TRANSPORTING ATPASE 40 961 - -
Vium243g00001 964 NCBIfam HAD-IC family P-type ATPase 340 467 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium243g00001 964 NCBIfam HAD-IC family P-type ATPase 669 781 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium243g00001 964 NCBIfam HAD-IC family P-type ATPase 495 646 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium243g00001 964 Gene3D - 396 745 IPR023214 -
Vium243g00001 964 SFLD p-type atpase 381 752 IPR044492 -
Vium243g00001 964 SUPERFAMILY HAD-like 397 805 IPR036412 -
Vium243g00001 964 NCBIfam calcium-translocating P-type ATPase, PMCA-type 57 961 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium243g00001 964 SFLD C1.7: P-type atpase like 381 752 - -
Vium243g00001 964 Pfam Cation transporter/ATPase, N-terminus 64 131 IPR004014 -
Vium243g00001 964 FunFam Calcium-transporting ATPase 717 963 - -
Vium243g00001 964 Pfam E1-E2 ATPase 182 377 - -
Vium243g00001 964 Gene3D - 88 282 - -
Vium243g00001 964 SUPERFAMILY Calcium ATPase, transduction domain A 183 279 IPR008250 -
Vium243g00001 964 Pfam Cation transporting ATPase, C-terminus 785 959 IPR006068 -
Vium243g00001 964 SMART Cation_ATPase_N_a_2 65 136 IPR004014 -
Vium243g00001 964 Pfam Cation transport ATPase (P-type) 460 539 - -
Vium243g00001 964 ProSitePatterns E1-E2 ATPases phosphorylation site. 401 407 IPR018303 -
Vium243g00001 964 Gene3D - 114 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium243g00001 Vium-Chr243 408 12097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium243g00001 2 963 Primary Pumps ATPases AT1G27770 80.685 0.0 1583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium243g00001 K01537 - gmx:547998 1783.07