Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2436g00014 ATGGTGCCAGAGAACATGAAGAAACAACTTGCTTTGTCTGTGAGAAGCATCCAATGGAGCTATGCAATTCTCTGGACTGATTCAACCACCCAACCAGGGGTATTGAGATGGGGGGAAGGGTATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGGGTGGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAATCCCTCAAAACTACAGAAATCACCCCACAAAGCAAACGGCCTTCGGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGTTCTGGCAAAGGGTCAATCCATTTGGCTCAACAATGCGCATTCCGCTGACTGTAAAGTTTTTAGTCGTTCTCTGCTCGCAAAGAGTGCATCCATCGAGACGGTCGTGTGTTTTCCGGTTATGGAAGGAGTTATCGAGCTAGGTACCACTGAACATGTCTCAGAAGATTTCAGTCTAATCGAGCGGATCAAGACTTCTTTCTTGAATAATTTTCATGTCAACGATCCTATTAAGTCAGGAACTGCATTGAAATCAAGGAACCAGGAAGATCTTGCTTATGTAGCATTTGATAATAATGTTGAATCAATTCCAGAAATTGGGTACGAAATAGCCAGCAAAACCTCTCCTGATGGTAGTTCAAATGCATTCCAAGCCAATCAACCACTGGATGAAACTTTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTGGCAAGTTATGGATGATGAGATAAGTAACTGTGTCCATAACTCCATGAATTCCAGCGACTGTATCTCACAAACTTTTGCCAGTCCTGAGAATATTCCTTCTTCACCCAAGTGTAACAACCCTTCTGACCCTTTTGCCCGAGATATTCAAAAGTGCAACAACCCAAAAATGACGCTAGTAGATCCTCGAGGTGATGATTGGCATTATCAGAGAGTTCTATCTGACCTTTTAAAAACCTCTGATCAGTTACTCATGAAAATGCATTCACAAAAGTTTCATCAGGAATCAAGCTTTGTTTGTTGGAGGCCAGAAAGGGCAACGGATTGCCAATGGCCAAGATCAGGAACTTCACAGAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACATGGATGGTCTGCATGAATCTCAAGAAGAAAATGACTATAAGGAGGGAATGAGACTAGAGACTGATGAAATTGGCATGAACCACGTAATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTTGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGTTCAAAGAGGGATAGCAAATATGGAGCCGGGGACTAGAAGATCACCTCAAGATATGGTAGAAAGGACTTCTGATCATTATTTTAGCAAAAACAACAACGGAAAGAAATCAGTTGTAAAAAAGAGAAAGGTCTGTGGCGTGGATGAGACAGGAAAAGAGATTAATTCAGATGCTTTAAAAGGAAGTTATGCTAATGATATTACTGTGAGAACTAGTGACAATGAAATTGTGATCGAAATGAAGTGCCCCGCAAGAGCAGGAAAGCTACTAGAAATTATGGAAGCAGTTAATAGTCTCAGTATAGATTTTAATTCGGTTCAGTCAACAGAGGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGCTCACAGGAGCAACTATTGCAACAACCAAAAGAATCAAACAAGCACTTCAAAAAGTGGCTTCGAAGTTCTGA 1881 0.4099 MVPENMKKQLALSVRSIQWSYAILWTDSTTQPGVLRWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTTEITPQSKRPSAALSPEDLTDAEWYYLVCMSFVFNIGQGLPGRVLAKGQSIWLNNAHSADCKVFSRSLLAKSASIETVVCFPVMEGVIELGTTEHVSEDFSLIERIKTSFLNNFHVNDPIKSGTALKSRNQEDLAYVAFDNNVESIPEIGYEIASKTSPDGSSNAFQANQPLDETFMVERITSGTSQVQSWQVMDDEISNCVHNSMNSSDCISQTFASPENIPSSPKCNNPSDPFARDIQKCNNPKMTLVDPRGDDWHYQRVLSDLLKTSDQLLMKMHSQKFHQESSFVCWRPERATDCQWPRSGTSQKLLKKVLFEVPQMHMDGLHESQEENDYKEGMRLETDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRIKELEVQRGIANMEPGTRRSPQDMVERTSDHYFSKNNNGKKSVVKKRKVCGVDETGKEINSDALKGSYANDITVRTSDNEIVIEMKCPARAGKLLEIMEAVNSLSIDFNSVQSTEADGNLYLTIKSVLTGATIATTKRIKQALQKVASKF 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2436g00014 626 Pfam Helix-loop-helix DNA-binding domain 428 474 IPR011598 GO:0046983
Vium2436g00014 626 SMART finulus 430 479 IPR011598 GO:0046983
Vium2436g00014 626 PANTHER TRANSCRIPTION FACTOR TT8 2 624 - -
Vium2436g00014 626 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 491 IPR036638 GO:0046983
Vium2436g00014 626 Coils Coil 463 490 - -
Vium2436g00014 626 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 424 473 IPR011598 GO:0046983
Vium2436g00014 626 Gene3D - 422 488 IPR036638 GO:0046983
Vium2436g00014 626 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 189 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2436g00014 Vium-Chr2436 87997 92090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2436g00014 2 623 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 46.037 2.08e-176 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2436g00014 bHLH-MYC_N 6.6e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2436g00014 - - gmx:100808167 1044.26