Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2436g00003 ATGCGGTCGTGGTGGGGAAAGTCTTCTTCCAAAGAGGCGAAAAGGAAGGAAAACAAGGAAAGTATTATTCACACCATACAGCGGAAATTAAAGAATGCTTCCGAAGAGAAATGCAATAATAAATCTGAAAGATCAAGGAGATATCGTGATGATGCCATCTCCAAAAAGGGATCTAGATCTCTTGTACCTTCAAGATCACCATCACCCTCTACACATGTATCCCGATGTCAAAGTTTTGCAGAAAGGCCTCTCTCTCAACCACTTCCATTACCAGGGTCACATCTTTCGGATGCCATTGGTGCAAATGCTGGGGTTATTTTAACATCAAAACTTGATAGAGCCATAAACTCAAAGCCATCTCTATATTTTCCCCTTCCAATACCTGGTTTTGTTTCAAACAAGGAAGACGCTACTGATATGGAAGGAGAAATAGCCACTGCATCTGTTTCTAGTGAAAGCTCAGTTGATAGTGGCAACTCATTTGATTCGCCGCATTTTGTTAGCCCTCTGGCTTCTGATTGTGAAAATGGAAACCGAGCAACCATTAATAGTTCTTTCAGTCTGGTGCACAAGAACCAACCACTTATTACTATACAAAGAAACTCAAGAACATTCTCAAAACCAAGTCCTCAGTTGTGCAATAATAAGCCATTGTCTACCTCACCAAGAGGGGTTCCATTATATCTGCAAAATCTGCAAGTGGCTCGCCCAGGTGGTTTGTGTAGTGCTCCAGGTAGTTCAATATCAAGTCCTAGAAATCCAACGGGAGCTTTTGGTCCTGAACAAATGTTGAACTCTGAATTACAGACAAGAAAGCCTTATCCAGATATAGCTTCTGGGCACTCCTATAGTCTGGTTTCAGGCCGTAATTCTAGCCATATTTCAGTTGGTGGGGATCTTTCGGGACAGATGATTTTGCCTCAAAACAGGTGTAGCCCTGAGTGTTCTCCAATAGTTAGTCCCAGAATGACAAGCCCTGGTCCCAGTTCCAGGATACAGAGTGGTACTGTGACCCCTCTGCATCCCAAAGCTGGAGGAACTGCAGCAGAAGCACATACAAGACGCCTTGACGATGTGAAGCAAAAGAATCATCAGTTACCACTTCCTCCAATAACAGTTACTAAGCCGTGTCCATTTTCTCCAACCTATTCTGCATCAACAACTCCTTCAGCCCCTCGTAGTCCTGCCGGATCAGAAACTTCGATAAGCACAGGTTCGCGCTGGAAAAAAGGACAGTTGCTTGGAAGGGGAACATTTGGACATGTATATCTTGGTTTTAACAGAGAAAGTGGTGAGATGTGTGCGATGAAGGAGGTAACCCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCACAGCAACTTGGCCAAGAAATTGCAATGCTTAGTCGGTTGCGGCATCCAAATATTGTTCAGTATTATGGATCTGAGACGATCGATGACAGACTTTATGTATACTTGGAGTATGTCTCCGGTGGGTCAATCTATAAGCTGGTTAAGGAATATGGCCAGTTAGGTGAAATTGCAATTCGCAATTATACTCGACAAATTTTGTTAGGCCTCGCATATTTACACGCCAAGAACACTGTTCACAGGGACATTAAGGGAGCAAACATATTGGTGGACCCTAATGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAGCATATAAGTGGTCCATCTTGTCCATTTTCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGGTTATAAAAAATTCAAATGGTTGTAATCTTGCGGTTGATATATGGAGTCTGGGATGCACTGTTTTGGAGATGGCGACAACAAAACCTCCTTGGAGCCAATATGAAGGGGTTGCTGCTATGTTTAAGATTGGGAACAGCAAGGAACTTCCGACAATTCCAGATCATCTTTCAGAAGATGGAAAAGATTTTGTAAGGCTTTGTTTGCAAAGGAATCCTCAAAATCGTCCCTCGGCTGCTCAACTTCTAGAGCATTCATTTGTTAAAAATGCTATGCTGGAAAGATCTATTTTATCTGCCGCTCCTTCAGAAGATCCTACTGCTATAATAAATGCAGTGAGATCTCTGGTCGTTGGACCTGCAAAACGTAATTCATGCTTAGACTCAGAAGTAGCCGGGACCAATCCGCCTAGAAACTTGAAAGCGGGTTCTGGATCAAGTGATCCTCATACACCAAGAGAGATCTCTTGTCCCATCTCTCCCTCTTTTCCTTATAAATCATTGCATACAAGTGGAAGGATGTCGCCTCCAATATCTAGCCCTCGTACTGCATCAGGCTCATCTTCGCCCCTAACCAGTGGCGGCGGTGCTATTCCATATCATCAGACAAAACAATCAATAATCTCCCATGAAGTTTCGGGGATGATACAAAAGTCCCATCATGGTGTTATTCCAATATCTAGCCCTCGTACTGCATCTGGCTCATCTTCTCCCCTAACCAGTAGCGGCGGTGCTATTCCATATCATCAGACAAAGCAATCAATAATCTCTCATGAAGTTTCGGGTATGATCCAAAAGTCCCATCATGGTGTTATTCCAATATCTAGCCCTCGTACTGCGTCTGGCACATCTTCACCACTAACCAGTGGCGGTGGTGCAATTCCATTTCATCAGTCAAAGCAACAACTATTCTCACATGAAGTTGTGGGTATGAGCCAAAAGTCTCAGAATGGTGCCATTCCAATTTCTAGCCCTCGTACTGCATCTAGCTCTTCTTCACCACTAACCGGCGGTGGAGGCGCTGATCCTTTTCATCAGACAAAGCAACCACTATTCTCACACGAAGTTTTGAGTACGATCCAAAAGTCTCAGAATGGTGCTATTCCAATATCTGGCCCTCGTACTGCATCCGGCACATATTCGCCACTAACCAGCGGTGGAGGCGCTGTTCCATTTCATCAGACAAAGCATCCACTATTCTCACATGAAGTTTCCGGTGTGATTCAAAGGTCTCAGAATGGTTGTGTTCCAATATCTAGCCCTCCAACTCCATCTGGCTCATCTTCGCCACTAACCTGTGGGGGAGGAGCTATTCCGTTTCATCAGACAAAGCAGCCACTGTTCTCACATGAAGTTGTGGGTATGACACAAAAGTCTCAGAATGGTGCCATTCCAATATCTAGCCCTCGTACTGCGTCTGGCTCATCTTCACCACTGACCAGTGGCGGCGGTGCTATTCCATTTCATCAGACAAAGCCACAACTATTCTCAAATGAACTTGTGGGTATGATCCAAAAGTCTCTGGATGGTGCTATTCCAACGGCTAGCCATCGTACTGCATCTGGCTCATCGCCTCTGACCAGTGGTGGCAGTGCTATTCCATATCTTCAGACAAGGCAATCACAAATATCACATGAAGTTGTTGGCATGAACCAAAATCCTCAGCATGGTTTGTATTCATTTGGAAATACCCCTCGTCAGGGTTCTCAGCATGCGCAGTTTGGGAGAAACTTGCAAACTACACATGCTTGCCGGGATGTAGGTTCATCTAACAATAATCATTCTAGGAGGGCTGTCCAGGGAGACCCAATAGAATTTCGCGATGGGAAATCATATTTGGCTGATTGCGTGTCACAACAGCTGTTGAGGGATTATGTACGGCTACATGCATGCCTGGATCGTAAACCCGATCCCCCAAATCCTGATCGCGCGAATGGCTTATGA 3672 0.4455 MRSWWGKSSSKEAKRKENKESIIHTIQRKLKNASEEKCNNKSERSRRYRDDAISKKGSRSLVPSRSPSPSTHVSRCQSFAERPLSQPLPLPGSHLSDAIGANAGVILTSKLDRAINSKPSLYFPLPIPGFVSNKEDATDMEGEIATASVSSESSVDSGNSFDSPHFVSPLASDCENGNRATINSSFSLVHKNQPLITIQRNSRTFSKPSPQLCNNKPLSTSPRGVPLYLQNLQVARPGGLCSAPGSSISSPRNPTGAFGPEQMLNSELQTRKPYPDIASGHSYSLVSGRNSSHISVGGDLSGQMILPQNRCSPECSPIVSPRMTSPGPSSRIQSGTVTPLHPKAGGTAAEAHTRRLDDVKQKNHQLPLPPITVTKPCPFSPTYSASTTPSAPRSPAGSETSISTGSRWKKGQLLGRGTFGHVYLGFNRESGEMCAMKEVTLFSDDAKSRESAQQLGQEIAMLSRLRHPNIVQYYGSETIDDRLYVYLEYVSGGSIYKLVKEYGQLGEIAIRNYTRQILLGLAYLHAKNTVHRDIKGANILVDPNGRIKLADFGMAKHISGPSCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSEDGKDFVRLCLQRNPQNRPSAAQLLEHSFVKNAMLERSILSAAPSEDPTAIINAVRSLVVGPAKRNSCLDSEVAGTNPPRNLKAGSGSSDPHTPREISCPISPSFPYKSLHTSGRMSPPISSPRTASGSSSPLTSGGGAIPYHQTKQSIISHEVSGMIQKSHHGVIPISSPRTASGSSSPLTSSGGAIPYHQTKQSIISHEVSGMIQKSHHGVIPISSPRTASGTSSPLTSGGGAIPFHQSKQQLFSHEVVGMSQKSQNGAIPISSPRTASSSSSPLTGGGGADPFHQTKQPLFSHEVLSTIQKSQNGAIPISGPRTASGTYSPLTSGGGAVPFHQTKHPLFSHEVSGVIQRSQNGCVPISSPPTPSGSSSPLTCGGGAIPFHQTKQPLFSHEVVGMTQKSQNGAIPISSPRTASGSSSPLTSGGGAIPFHQTKPQLFSNELVGMIQKSLDGAIPTASHRTASGSSPLTSGGSAIPYLQTRQSQISHEVVGMNQNPQHGLYSFGNTPRQGSQHAQFGRNLQTTHACRDVGSSNNNHSRRAVQGDPIEFRDGKSYLADCVSQQLLRDYVRLHACLDRKPDPPNPDRANGL 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 848 871 - -
Vium2436g00003 1223 Coils Coil 16 36 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 59 78 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 704 775 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 348 362 - -
Vium2436g00003 1223 FunFam Mitogen-activated protein kinase kinase kinase 406 688 - -
Vium2436g00003 1223 SMART serkin_6 408 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 800 822 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 320 337 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 320 407 - -
Vium2436g00003 1223 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 28 688 - -
Vium2436g00003 1223 CDD STKc_MEKK1_plant 407 664 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 1036 1060 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 1 78 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 739 775 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 940 959 - -
Vium2436g00003 1223 ProSitePatterns Protein kinases ATP-binding region signature. 414 437 IPR017441 GO:0005524
Vium2436g00003 1223 ProSiteProfiles Protein kinase domain profile. 408 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2436g00003 1223 SUPERFAMILY Protein kinase-like (PK-like) 406 665 IPR011009 -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 715 729 - -
Vium2436g00003 1223 Pfam Protein kinase domain 409 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 1036 1066 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 888 923 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 377 407 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 888 913 - -
Vium2436g00003 1223 MobiDBLite consensus disorder prediction 7 56 - -
Vium2436g00003 1223 Gene3D Transferase(Phosphotransferase) domain 1 405 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2436g00003 Vium-Chr2436 37591 46077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2436g00003 4 787 MAP Kinase Kinase Kinase AT1G63700 61.327 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium2436g00003 Pkinase 2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2436g00003 K20717 - gmx:100814422 1472.6