Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2431g00001 ATGGCTAAGGATGTTGAGGTTCAAGAGCAGGGAGAATACTCTGCAAAAGACTATCATGACCCTCCTCCAGCACCCTTGTTCGACCCCGAAGAGCTCACACAGTGGTCCTTCTATAGAGCCCTTATCGCTGAGTTCATTGCTACCCTTCTCTTCCTCTATGTCACTGTGCTAACCATAATTGGCTACAAAAGACAGACCGATACCAACGTTGGTGGCACCGAATGTGATGGGGTTGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACTGCCGGTATTTCTGGAGGACACATAAACCCAGCAGTGACATTCGGGCTGTTCCTAGGACGCAAGGTGTCGTTGATAAGGGCGTTGTTGTACATGGTAGCACAGTGTGCTGGTGCTATCTGTGGCACGGGACTGGCGAAGGGGTTCCAAAAGGCGTACTACAACAGGTATGGAGGTGGTGCTAACTCTGTTGCTGATGGCTACAACAAGGGCACTGCTTTGGGTGCTGAGATTATCGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCTGTACTAGCACCACTCCCTATTGGCTTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCAGTTACTGGCACTGGCATTAACCCAGCAAGGAGTTTTGGAGCAGCTGTAATCTACAATGACGACAAAATCTGGGATGATCAGTGGATTTTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTACCATCAATACATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCATTCAGGAGCAATGCTTAA 858 0.4918 MAKDVEVQEQGEYSAKDYHDPPPAPLFDPEELTQWSFYRALIAEFIATLLFLYVTVLTIIGYKRQTDTNVGGTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCAGAICGTGLAKGFQKAYYNRYGGGANSVADGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNDDKIWDDQWIFWVGPIVGAAVAAFYHQYILRAAAIKALGSFRSNA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2431g00001 285 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2431g00001 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2431g00001 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 274 IPR034294 -
Vium2431g00001 285 FunFam Probable aquaporin PIP1-2 24 285 - -
Vium2431g00001 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Vium2431g00001 285 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Vium2431g00001 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2431g00001 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2431g00001 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2431g00001 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2431g00001 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2431g00001 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2431g00001 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2431g00001 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2431g00001 Vium-Chr2431 20380 22297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2431g00001 1 283 Major Intrinsic Protein MIP AT5G60660 80.919 6.02e-175 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2431g00001 K09872 - gmx:100811119 569.696