LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2428g00052	ATGATGACGCCATTACCGGTGGAGCAAACCGGTGAATCAGCGCCGGCGGAGTCACAGAGATCTATTCCGACGCCGTTTCTGACGAAGACGTACCAGCTCGTGGATGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGATGGCACGAGTTTCATCGTTTGGCGGCCTGCGGAATTCGCACGTGATTTGCTTCCGAAGTACTTCAAACACAACAATTTTTCCAGTTTTGTCCGTCAGCTAAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGACTGTTTCCGGCGAGGTGAGAGAACTCTGCTCAGGGACATACAACGCCGGAAAATATTACCGGTGCCACCAACTGCGCAACCTGCAGTGGCCACAGCCAATACTGTGACGGTTGCTGTGGCGGCACCGGCGATCAGAACGGTGTCTCCGACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGAAATAATAATAATACAGTGCACCGCACCACGAGTTGCACCACTACGCCCGAGCTGTTAGAAGAAAATGAAAGGCTTAGAAAAGAGAACATGCAACTGAATCACGAGTTGAGTCAATTGAAGAGTTTGTGTAATAACATACTCGCTTTGATGACCAATTACGCTTCTGGTTTTAGCCGTCAGCAGTTAGAATCGTCCACTAGTGCTGTGAGGACCGTGCCGGTGCCGGAAGGGAAGGCTCTGGAGCTTTTGCCTGCGAGGCATGTTTCGTCAGCTGATGACGCCATGCATGGTGGCGCTGCCGGCTTAACGCCGTGTACGAATGCGAATGCGAATGCAGCGGAGGCAGAGGTTCCCAAGCTGTTTGGGGTTTCTATTGGGTTGAAACGGTGTAGGACAGAGTGCGAGGCCGAACCGGAGGGAGAAGAACAGAATCAAATGCAAACGCGAGCTGAGGCACAAACACAGACACAGTCCTCTCAAGAACCAGATGGCGGGCCAGATGTGAAATCTGAACCGCTTGATGGGGATGAGTCGGATGATCAGGATCCTCGGTGGCTGGAGCTTGGGAAATAA	1071	0.5229	MMTPLPVEQTGESAPAESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERTLLRDIQRRKILPVPPTAQPAVATANTVTVAVAAPAIRTVSPTTSGDEQVLSSNSSPIAGNNNNTVHRTTSCTTTPELLEENERLRKENMQLNHELSQLKSLCNNILALMTNYASGFSRQQLESSTSAVRTVPVPEGKALELLPARHVSSADDAMHGGAAGLTPCTNANANAAEAEVPKLFGVSIGLKRCRTECEAEPEGEEQNQMQTRAEAQTQTQSSQEPDGGPDVKSEPLDGDESDDQDPRWLELGK	356

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium2428g00052	356	Coils	Coil	181	208	-	-
Vium2428g00052	356	MobiDBLite	consensus disorder prediction	311	330	-	-
Vium2428g00052	356	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	15	314	IPR027725	-
Vium2428g00052	356	Gene3D	-	18	116	IPR036388	-
Vium2428g00052	356	MobiDBLite	consensus disorder prediction	300	356	-	-
Vium2428g00052	356	MobiDBLite	consensus disorder prediction	148	176	-	-
Vium2428g00052	356	MobiDBLite	consensus disorder prediction	1	21	-	-
Vium2428g00052	356	FunFam	Heat stress transcription factor B-4	18	116	-	-
Vium2428g00052	356	ProSitePatterns	HSF-type DNA-binding domain signature.	65	89	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Vium2428g00052	356	SMART	hsfneu3	22	115	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2428g00052	Vium-Chr2428	238744	240782	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2428g00052	17	356	HSF	AT4G11660	51.282	1.54e-99	297

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vium2428g00052		HSF_DNA-bind	1.2e-32	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2428g00052	K09419		-	gmx:100791020	580.867

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