Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2428g00051 ATGATGACGCCATTACCGGTGGAGCAAACCGGTGAATCAGCGCCGGCGGAGTCACAGAGATCTATTCCGACGCCGTTTCTGACGAAGACGTACCAGCTCGTGGATGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGATGGCACGAGTTTCATCGTTTGGCGGCCTGCGGAATTCGCACGTGATTTGCTTCCGAAGTACTTCAAACACAACAATTTTTCCAGTTTTGTCCGTCAGCTAAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGACTGTTTCCGGCGAGGTGAGAGAACTCTGCTCAGGGACATACAACGCCGGAAAATATTACCGGTGCCACCAACTGCGCAACCTGCAGTGGCCACAGCCAATACTGTGACGGTTGCTGTGGCGGCACCGGCGATCAGAACGGTGTCTCCGACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGAAATAATAATAATACAGTGCACCGCACCACGAGTTGCACCACTACGCCCGAGCTGTTAGAAGAAAATGAAAGGCTTAGAAAAGAGAACATGCAACTGAATCACGAGTTGAGTCAATTGAAGAGTTTGTGTAATAACATACTCGCTTTGATGACCAATTACGCTTCTGGTTTTAGCCGTCAGCAGTTAGAATCGTCCACTAGTGCTGTGAGGACCGTGCCGGTGCCGGAAGGGAAGGCTCTGGAGCTTTTGCCTGCGAGGCATGTTTCGTCAGCTGATGACGCCATGCATGGTGGCGCTGCCGGCTTAACGCCGTGTACGAATGCGAATGCGAATGCAGCGGAGGCAGAGGTTCCCAAGCTGTTTGGGGTTTCTATTGGGTTGAAACGGTGTAGGACAGAGTGCGAGGCCGAACCGGAGGGAGAAGAACAGAATCAAATGCAAACGCGAGCTGAGGCACAAACACAGACACAGTCCTCTCAAGAACCAGATGGCGGGCCAGATGTGAAATCTGAACCGCTTGATGGGGATGAGTCGGATGATCAGGATCCTCGGTGGCTGGAGCTTGGGAAATAA 1071 0.5229 MMTPLPVEQTGESAPAESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERTLLRDIQRRKILPVPPTAQPAVATANTVTVAVAAPAIRTVSPTTSGDEQVLSSNSSPIAGNNNNTVHRTTSCTTTPELLEENERLRKENMQLNHELSQLKSLCNNILALMTNYASGFSRQQLESSTSAVRTVPVPEGKALELLPARHVSSADDAMHGGAAGLTPCTNANANAAEAEVPKLFGVSIGLKRCRTECEAEPEGEEQNQMQTRAEAQTQTQSSQEPDGGPDVKSEPLDGDESDDQDPRWLELGK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2428g00051 356 Coils Coil 181 208 - -
Vium2428g00051 356 MobiDBLite consensus disorder prediction 311 330 - -
Vium2428g00051 356 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 314 IPR027725 -
Vium2428g00051 356 Gene3D - 18 116 IPR036388 -
Vium2428g00051 356 MobiDBLite consensus disorder prediction 300 356 - -
Vium2428g00051 356 MobiDBLite consensus disorder prediction 148 176 - -
Vium2428g00051 356 MobiDBLite consensus disorder prediction 1 21 - -
Vium2428g00051 356 FunFam Heat stress transcription factor B-4 18 116 - -
Vium2428g00051 356 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2428g00051 356 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2428g00051 356 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2428g00051 356 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2428g00051 356 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2428g00051 356 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2428g00051 356 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2428g00051 Vium-Chr2428 238730 240782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2428g00051 17 356 HSF AT4G11660 51.282 1.54e-99 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium2428g00051 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2428g00051 K09419 - gmx:100791020 580.867