Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2428g00036 ATGGTTAGTAACGAGGGCAACGAGAAGGAGAAAGACCTTGAGTTTTTGTTTGAAGATGTTATAAACGACGTCGCACAAAATGATATTGAAACTGCCAAGTTAGAGAGTGAGAGCAGTAGCAGTGATGACGACGAAATTCATCAAACACACTCTCACTCTTTCACTTCTCTCCAATGGCCCCAAAGTTACAAAGAGACTACAGATTCTTATACACTTGCAGCAACTCCACATTTCGAATCAATTCTACGAGTACCAAGTATTATATTGTCCAGTTTTGAAAGTCGTTCAAAGCAGAACTCGCAAATAGATGGAAAGACTCCTTTCCTCCCTAGTCCTGAAGTCACTACCCAATCACCATTGTTGAAGGAAGATGCAGCACAAGGGCATTCAGTAGGCGAATTGCCCGTTAGTCGTGGGTGCAGCTTAATTCAAACAATTTTCAATGCAACTAATGTGATGGCTGGAGTTGGCATTCTCTCAACACCTTATACAATGAAAGAAGCTGGTTGGATTAGCATGGTGTTGATGGTTCTTTTCGCTGTCATTTGTTGCTATACAGCCACCCTTATGAGATACTGCTTTGAAAGCAGAGAAGGAATCAATAGCTACCCAGATATAGGAGAAGCTGCATTTGGAAAATATGGTCGTATTATTGTATCAATCATCTTGTACACGGAATTATATTCATGTTGTGTAGAATTCGTCACCTTGGAAGGAGACAACCTCACTGGACTCTTTCCAGGAACATTCTTAGATTTGGGTAGTTTGCATTTAGATTCTGTGCACTTGTTTGGAATTTTAGCTGCACTTATTTTTATCCCAACTGTTTTGCTGAAGGATCTTCGCATAATCTCTGTACTGTCAGCTGGAGGAGTTTTTGCAACACTGTTGATTGTTATCTGTGTGTATTGTGTTGGGATGATGGATGGTATTGGATTCCATCACAGCACAAAATTTGTCAAGTGGAGTGGCATTCCATTAGCTATTGGTATCCACGGGTTTTGCTTTGCAGGCCATTCAGTTTTTCCAAATATTTACCAATCTATGGCTGACAAAACACAATTTACCAAAGCATTAATTGTATGTTTTGCATTGTCTGTTGCAATATATGGAGGTGTTGCCATCATGGGATTCCTTGAATTTGGCAACGACACTTTGTCTCAAATAACATTAAATTTGCCACGAAATGCATTTGCTTCCCAGGTTGCAATGTGGACAACAGTAATTAACCCATTCACCAAATATGCATTATTGATGACCCCATTAGCAAGAAGTCTGGAGGAGCTGCTACCAGATAGATACTCAAGTAGTAATCGGTGTTTCGTTCTTATCAGAGTTGCACTTGTTGTATCTACAGTTTGTGCCGCTTTTCTGATACCCTTTTTCGGGTATGTAATGGCTTTAATTGGCTCTCTCTTCAGTATACTTGTGTCAGTGATATTTCCGAGTTTATGTTTTATGAGAATTGTGGGGAAAAAAGCATCGAATACACAGGTTGCGCTGAGCGTGGTAATTACTGCATTTGGAGTCATTTTTGGAGTTCTGGGAACATATTCATCTGTGGTGAATATTGTGAACAGTTACTGA 1587 0.3989 MVSNEGNEKEKDLEFLFEDVINDVAQNDIETAKLESESSSSDDDEIHQTHSHSFTSLQWPQSYKETTDSYTLAATPHFESILRVPSIILSSFESRSKQNSQIDGKTPFLPSPEVTTQSPLLKEDAAQGHSVGELPVSRGCSLIQTIFNATNVMAGVGILSTPYTMKEAGWISMVLMVLFAVICCYTATLMRYCFESREGINSYPDIGEAAFGKYGRIIVSIILYTELYSCCVEFVTLEGDNLTGLFPGTFLDLGSLHLDSVHLFGILAALIFIPTVLLKDLRIISVLSAGGVFATLLIVICVYCVGMMDGIGFHHSTKFVKWSGIPLAIGIHGFCFAGHSVFPNIYQSMADKTQFTKALIVCFALSVAIYGGVAIMGFLEFGNDTLSQITLNLPRNAFASQVAMWTTVINPFTKYALLMTPLARSLEELLPDRYSSSNRCFVLIRVALVVSTVCAAFLIPFFGYVMALIGSLFSILVSVIFPSLCFMRIVGKKASNTQVALSVVITAFGVIFGVLGTYSSVVNIVNSY 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2428g00036 528 MobiDBLite consensus disorder prediction 35 50 - -
Vium2428g00036 528 PANTHER OS05G0424000 PROTEIN-RELATED 145 515 - -
Vium2428g00036 528 MobiDBLite consensus disorder prediction 33 55 - -
Vium2428g00036 528 Gene3D Amino acid/polyamine transporter I 137 527 - -
Vium2428g00036 528 FunFam Amino acid transporter AVT1A 138 527 - -
Vium2428g00036 528 Pfam Transmembrane amino acid transporter protein 140 520 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2428g00036 Vium-Chr2428 156797 161030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2428g00036 2 468 Amino Acid or Auxin Permease AAAP Family AT2G41190 58.664 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2428g00036 K15015 - gmx:100816368 840.876