Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2428g00031 | ATGGGTGAGAAGTTAGAAGGTTGGGAGTGCAGTAGCAGTTTCCAGTGCTGTGGAAATTTGTGGCCTAAGGCACACTATCCTTCGATGACGGCGGTGGAAGCGGGAAAGACGGTGGCGGAATTAGAAGGATCAGAGAGCAAAGTGGTTTTGTTCGGCGTTACGGGAATGACGTGTGCTGCGTGCGCCGGATCCGTTGAGAAAACCATCAAACGCTTACCTGGAATCCGAGAGGCCGTTGTTGATGTCTTGAATCATAAAGCTCAGGTTCTTTACTTTCCTTCAATGGTTAACGAGGAGAGGATACGCGAGGCCATTGAAGATGCTGGATTTGAAGCCAAAGTTATTGAAGAAGACTCCAACTACACCTCAACTCAAATATGCCGCATACACATACGAGGCATGACTTGTACCTCTTGCTCCTCCACTATCGAATCAGCTCTACAATCCCTTCGTGGGGTGCACAAGGCACGAGTGGCCTTAACAACAGAAGAAGCAGAAGTCCACTATGACCCCAAAATCCTCACCCACAACTACCTAATGGAAGCTATACAAGGCACCGGGTTCGAAGCCATACTAATAAGCACAGGGGAACACATGAGCAAGATTGAACTTAAAATTGATGGCATTAAAAACGACCAATCCCTTGGTGCCATTGAGCGCTCTCTCCGTTCAATCCCTGGTGTTGAAACCATAGACATATATCCGGACATTAACAAAATTGCCATAACTTACATACCACACATGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCCACTGGATCAGGGTGTTTTAAAGCGGTGATATTTCCAAACGATGAAGGAAGAGAAGCACTTAGACAACAGGAAATTAACCGATACTTCAAGCTTTTCATATGGAGTCTAGCTTTTACGATTCCTGTTTTCTTGACATCCATGGTCCTCATGTATATACCTGGAGTTAAACGTGTTTTGGATGTCAAAATTGTTAATATGTTGAATATTGGACTTCTCTTGAGGTGTGACTTTGCTACCCCGGTGCAGTTTATCATAGGTAGACGGTTCTATGTTGGGGCATATAAAGCGTTGCGCAAGGGTTCTGCTAACATGGATGTGTTGATAGCATTAGGGACAAATGCAGCATATTTCTATTCTCTCTATGTTGTGGAAAGATCTGTTTTCTCTCGGCATTTCAAAGGAAACGATTTCTTTGAGACCAGCTCTATGCTTATTTCTTTTATTCTGTTGGGTAAGTATTTAGAAGTGTTAGCAAAGGGGAAGACATCTCAGGCGATTGCAAAGCTTATGAACTTGACACCTGAGACAGCGATCTTGTTAACTCAAGATGATAAGGGGGATCCATTAGTAGATCACATTCAACATAAATCTCTTCTACCGGATCTTCTTCCAACGATCTAA | 1401 | 0.4354 | MGEKLEGWECSSSFQCCGNLWPKAHYPSMTAVEAGKTVAELEGSESKVVLFGVTGMTCAACAGSVEKTIKRLPGIREAVVDVLNHKAQVLYFPSMVNEERIREAIEDAGFEAKVIEEDSNYTSTQICRIHIRGMTCTSCSSTIESALQSLRGVHKARVALTTEEAEVHYDPKILTHNYLMEAIQGTGFEAILISTGEHMSKIELKIDGIKNDQSLGAIERSLRSIPGVETIDIYPDINKIAITYIPHMTGPRTFIEVIESTGSGCFKAVIFPNDEGREALRQQEINRYFKLFIWSLAFTIPVFLTSMVLMYIPGVKRVLDVKIVNMLNIGLLLRCDFATPVQFIIGRRFYVGAYKALRKGSANMDVLIALGTNAAYFYSLYVVERSVFSRHFKGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMNLTPETAILLTQDDKGDPLVDHIQHKSLLPDLLPTI | 466 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2428g00031 | 466 | ProSiteProfiles | Heavy-metal-associated domain profile. | 125 | 191 | IPR006121 | GO:0046872 | |
Vium2428g00031 | 466 | Pfam | Heavy-metal-associated domain | 129 | 189 | IPR006121 | GO:0046872 | |
Vium2428g00031 | 466 | Pfam | Heavy-metal-associated domain | 53 | 111 | IPR006121 | GO:0046872 | |
Vium2428g00031 | 466 | ProSiteProfiles | Heavy-metal-associated domain profile. | 200 | 266 | IPR006121 | GO:0046872 | |
Vium2428g00031 | 466 | PANTHER | P-TYPE CATION-TRANSPORTING ATPASE | 18 | 447 | - | - | |
Vium2428g00031 | 466 | SUPERFAMILY | HMA, heavy metal-associated domain | 45 | 118 | IPR036163 | GO:0046872 | |
Vium2428g00031 | 466 | SUPERFAMILY | HMA, heavy metal-associated domain | 196 | 265 | IPR036163 | GO:0046872 | |
Vium2428g00031 | 466 | ProSitePatterns | Heavy-metal-associated domain. | 131 | 160 | IPR017969 | GO:0046872 | |
Vium2428g00031 | 466 | ProSitePatterns | Heavy-metal-associated domain. | 53 | 82 | IPR017969 | GO:0046872 | |
Vium2428g00031 | 466 | CDD | HMA | 216 | 262 | IPR006121 | GO:0046872 | |
Vium2428g00031 | 466 | PRINTS | Copper-transporting ATPase 1 signature | 103 | 123 | - | - | |
Vium2428g00031 | 466 | PRINTS | Copper-transporting ATPase 1 signature | 149 | 170 | - | - | |
Vium2428g00031 | 466 | PRINTS | Copper-transporting ATPase 1 signature | 74 | 97 | - | - | |
Vium2428g00031 | 466 | PRINTS | Copper-transporting ATPase 1 signature | 48 | 73 | - | - | |
Vium2428g00031 | 466 | CDD | HMA | 53 | 113 | IPR006121 | GO:0046872 | |
Vium2428g00031 | 466 | SUPERFAMILY | HMA, heavy metal-associated domain | 123 | 197 | IPR036163 | GO:0046872 | |
Vium2428g00031 | 466 | NCBIfam | copper ion binding protein | 129 | 190 | IPR006122 | GO:0005507 | |
Vium2428g00031 | 466 | NCBIfam | copper ion binding protein | 51 | 112 | IPR006122 | GO:0005507 | |
Vium2428g00031 | 466 | CDD | HMA | 131 | 190 | IPR006121 | GO:0046872 | |
Vium2428g00031 | 466 | ProSiteProfiles | Heavy-metal-associated domain profile. | 47 | 113 | IPR006121 | GO:0046872 | |
Vium2428g00031 | 466 | FunFam | ATPase copper transporting beta | 122 | 195 | - | - | |
Vium2428g00031 | 466 | Gene3D | - | 196 | 270 | - | - | |
Vium2428g00031 | 466 | Gene3D | - | 124 | 195 | - | - | |
Vium2428g00031 | 466 | Gene3D | - | 46 | 119 | - | - | |
Vium2428g00031 | 466 | FunFam | Copper-transporting ATPase HMA5 | 46 | 117 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2428g00031 | Vium-Chr2428 | 122908 | 130094 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2428g00031 | 50 | 447 | Primary Pumps ATPases | AT1G63440 | 63.682 | 0.0 | 533 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2428g00031 | K17686 | - | vum:124830526 | 923.694 |