Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2428g00031 ATGGGTGAGAAGTTAGAAGGTTGGGAGTGCAGTAGCAGTTTCCAGTGCTGTGGAAATTTGTGGCCTAAGGCACACTATCCTTCGATGACGGCGGTGGAAGCGGGAAAGACGGTGGCGGAATTAGAAGGATCAGAGAGCAAAGTGGTTTTGTTCGGCGTTACGGGAATGACGTGTGCTGCGTGCGCCGGATCCGTTGAGAAAACCATCAAACGCTTACCTGGAATCCGAGAGGCCGTTGTTGATGTCTTGAATCATAAAGCTCAGGTTCTTTACTTTCCTTCAATGGTTAACGAGGAGAGGATACGCGAGGCCATTGAAGATGCTGGATTTGAAGCCAAAGTTATTGAAGAAGACTCCAACTACACCTCAACTCAAATATGCCGCATACACATACGAGGCATGACTTGTACCTCTTGCTCCTCCACTATCGAATCAGCTCTACAATCCCTTCGTGGGGTGCACAAGGCACGAGTGGCCTTAACAACAGAAGAAGCAGAAGTCCACTATGACCCCAAAATCCTCACCCACAACTACCTAATGGAAGCTATACAAGGCACCGGGTTCGAAGCCATACTAATAAGCACAGGGGAACACATGAGCAAGATTGAACTTAAAATTGATGGCATTAAAAACGACCAATCCCTTGGTGCCATTGAGCGCTCTCTCCGTTCAATCCCTGGTGTTGAAACCATAGACATATATCCGGACATTAACAAAATTGCCATAACTTACATACCACACATGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCCACTGGATCAGGGTGTTTTAAAGCGGTGATATTTCCAAACGATGAAGGAAGAGAAGCACTTAGACAACAGGAAATTAACCGATACTTCAAGCTTTTCATATGGAGTCTAGCTTTTACGATTCCTGTTTTCTTGACATCCATGGTCCTCATGTATATACCTGGAGTTAAACGTGTTTTGGATGTCAAAATTGTTAATATGTTGAATATTGGACTTCTCTTGAGGTGTGACTTTGCTACCCCGGTGCAGTTTATCATAGGTAGACGGTTCTATGTTGGGGCATATAAAGCGTTGCGCAAGGGTTCTGCTAACATGGATGTGTTGATAGCATTAGGGACAAATGCAGCATATTTCTATTCTCTCTATGTTGTGGAAAGATCTGTTTTCTCTCGGCATTTCAAAGGAAACGATTTCTTTGAGACCAGCTCTATGCTTATTTCTTTTATTCTGTTGGGTAAGTATTTAGAAGTGTTAGCAAAGGGGAAGACATCTCAGGCGATTGCAAAGCTTATGAACTTGACACCTGAGACAGCGATCTTGTTAACTCAAGATGATAAGGGGGATCCATTAGTAGATCACATTCAACATAAATCTCTTCTACCGGATCTTCTTCCAACGATCTAA 1401 0.4354 MGEKLEGWECSSSFQCCGNLWPKAHYPSMTAVEAGKTVAELEGSESKVVLFGVTGMTCAACAGSVEKTIKRLPGIREAVVDVLNHKAQVLYFPSMVNEERIREAIEDAGFEAKVIEEDSNYTSTQICRIHIRGMTCTSCSSTIESALQSLRGVHKARVALTTEEAEVHYDPKILTHNYLMEAIQGTGFEAILISTGEHMSKIELKIDGIKNDQSLGAIERSLRSIPGVETIDIYPDINKIAITYIPHMTGPRTFIEVIESTGSGCFKAVIFPNDEGREALRQQEINRYFKLFIWSLAFTIPVFLTSMVLMYIPGVKRVLDVKIVNMLNIGLLLRCDFATPVQFIIGRRFYVGAYKALRKGSANMDVLIALGTNAAYFYSLYVVERSVFSRHFKGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMNLTPETAILLTQDDKGDPLVDHIQHKSLLPDLLPTI 466
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium2428g00031 466 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Vium2428g00031 466 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Vium2428g00031 466 Pfam Heavy-metal-associated domain 53 111 IPR006121 GO:0046872
Vium2428g00031 466 ProSiteProfiles Heavy-metal-associated domain profile. 200 266 IPR006121 GO:0046872
Vium2428g00031 466 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 18 447 - -
Vium2428g00031 466 SUPERFAMILY HMA, heavy metal-associated domain 45 118 IPR036163 GO:0046872
Vium2428g00031 466 SUPERFAMILY HMA, heavy metal-associated domain 196 265 IPR036163 GO:0046872
Vium2428g00031 466 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Vium2428g00031 466 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Vium2428g00031 466 CDD HMA 216 262 IPR006121 GO:0046872
Vium2428g00031 466 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Vium2428g00031 466 PRINTS Copper-transporting ATPase 1 signature 149 170 - -
Vium2428g00031 466 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Vium2428g00031 466 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Vium2428g00031 466 CDD HMA 53 113 IPR006121 GO:0046872
Vium2428g00031 466 SUPERFAMILY HMA, heavy metal-associated domain 123 197 IPR036163 GO:0046872
Vium2428g00031 466 NCBIfam copper ion binding protein 129 190 IPR006122 GO:0005507
Vium2428g00031 466 NCBIfam copper ion binding protein 51 112 IPR006122 GO:0005507
Vium2428g00031 466 CDD HMA 131 190 IPR006121 GO:0046872
Vium2428g00031 466 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Vium2428g00031 466 FunFam ATPase copper transporting beta 122 195 - -
Vium2428g00031 466 Gene3D - 196 270 - -
Vium2428g00031 466 Gene3D - 124 195 - -
Vium2428g00031 466 Gene3D - 46 119 - -
Vium2428g00031 466 FunFam Copper-transporting ATPase HMA5 46 117 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium2428g00031 Vium-Chr2428 122908 130094 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2428g00031 50 447 Primary Pumps ATPases AT1G63440 63.682 0.0 533
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2428g00031 K17686 - vum:124830526 923.694