Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2428g00030 ATGACTTGTACCTCTTGCTCCTCCACTATCGAATCAGCTCTACAATCCCTTCGTGGGGTGCACAAGGCACGAGTGGCCTTAACAACAGAAGAAGCAGAAGTCCACTATGACCCCAAAATCCTCACCCACAACTACCTAATGGAAGCTATACAAGGCACCGGGTTCGAAGCCATACTAATAAGCACAGGGGAACACATGAGCAAGATTGAACTTAAAATTGATGGCATTAAAAACGACCAATCCCTTGGTGCCATTGAGCGCTCTCTCCGTTCAATCCCTGGTGTTGAAACCATAGACATATATCCGGACATTAACAAAATTGCCATAACTTACATACCACACATGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCCACTGGATCAGGGTGTTTTAAAGCGGTGATATTTCCAAACGATGAAGGAAGAGAAGCACTTAGACAACAGGAAATTAACCGATACTTCAAGCTTTTCATATGGAGTCTAGCTTTTACGATTCCTGTTTTCTTGACATCCATGGTCCTCATGTATATACCTGGAGTTAAACGTGTTTTGGATGTCAAAATTGTTAATATGTTGAATATTGGACTTCTCTTGAGGTGTGACTTTGCTACCCCGGTGCAGTTTATCATAGGTAGACGGTTCTATGTTGGGGCATATAAAGCGTTGCGCAAGGGTTCTGCTAACATGGATGTGTTGATAGCATTAGGGACAAATGCAGCATATTTCTATTCTCTCTATGTTGTGGAAAGATCTGTTTTCTCTCGGCATTTCAAAGGAAACGATTTCTTTGAGACCAGCTCTATGCTTATTTCTTTTATTCTGTTGGGTAAGTATTTAGAAGTGTTAGCAAAGGGGAAGACATCTCAGGCGATTGCAAAGCTTATGAACTTGACACCTGAGACAGCGATCTTGTTAACTCAAGATGATAAGGGGGATGTTGTTAGTGAAAAACAAATTGATATTCGGTTGATACAAAAGGACGATGTGATCAAGGTGGTCCCTGGTTCAAAAGTAGCATCTGATGGCTTTGTCATATGGGGACAAAGTCATGTAAATGAGAGCATGATAACCGGAGAGGGAAGGCCTGTGGCAAAGAGGAGGGGTGATATGGTGATTGGAGGCACTATGAATGAGAATGGGGTTATGCATGTTAAGGTGACAAGAGTTGGATCCGAGAGTGCTCTCTCCCAGATCGTTCGTCTTGTTGAGTCAGCTCAGATGGCTAAAGCTCCAGTTCAAAAACTTGCAGATCATATTTCTAAATATTTTGTTCCTCTGGTCATTGTGCTTTCTCTTTCAACATGGCTCTCCTGGTTTCTAGCAGGAAAGTTACATGCATACCCAAAATCTTGGATACCATCCTCCATGAACTACTTTGAGCTTGCACTTCAGTTTGGTATTTCGGTCATGGTCATTGCCTGCCCTTGTGCTCTAGGCCTAGCCACTCCTACTGCTGTTATGGTTGGTACTGGAGTTGGTGCAACGCAAGGTGTTTTGATCAAAGGGGGCCAAGCACTAGAAAGTGCACACAAGGTGAATTGCATTGTGTTTGACAAGACAGGAACACTCACAGTTGGGAAGCCAATGGTTGTAACTACAAAACTCTTCAAAAAGATGTCAATTAAAGATTTCTATGAATTTACTGCTGCAGCAGAGGTGAACAGCGAACATCCAATCGCTAAGGCCATTGTTGAGCACGCCAAGAAGATCACAGAAGAACAAAATCATTCCTGGCCAGAAGCACACAACTTTGTTTCTGTTTCAGGCCATGGAGTAAAGGCCATTGTTCTAAACAAGGATATATTGGTTGGGAATAAAAAGATGATGCTGGATCATAACATATCCATTTCAGCAGATGCTGAAGAAATACTAGCAGAAGCTGAAAGCCTGGCTCAAACTGGGATTTTAGTATCCTTGGATGGAGAAGTCGCTGGAGTTTTGGCTGTCTCAGATCCATTGAAACCTGGCGCCAATGAAGTTATTTCCATTCTTAATTCCATGAAAATTAAGAGCATCATGGTGACAGGTGATAACTGGGGTACTGCCAATTCCATTGCCAGACAAGCCGGTATTGAAACTATCATAGCAGAGGCTCAACCAGAGACTAAAGCAACTAAAATAAAAGAACTGCAGGCTTCTGGGTATACGGTGGCAATGGTGGGAGATGGCATCAACGACTCACCAGCACTTGTGGCAGCTGATGTTGGAATGGCAATAGGTGCTGGCACAGACATTGCAATTGAGGCAGCTGACATCGTTCTGATGAAGAGCAACTTGGAAGATATAATCATTGCCATTGACCTTGCAAACAAAACCTTCTCTCGTATACGTCTAAACTACTTTTGGGCTTTGGGTTACAATATCTTAGCCATCCCAATTGCAGCGGGCATTCTTTACTCATCCACTAGATTTCGCTTACCACCATGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTCTCAGTGTGGTTTGCTCATCCCTCTTGTTAAAGAATTACAAGAGACCTTCGAAGCTAAATAACATGGAGATAAATGGTGTAAAGATTGAATAA 2556 0.428 MTCTSCSSTIESALQSLRGVHKARVALTTEEAEVHYDPKILTHNYLMEAIQGTGFEAILISTGEHMSKIELKIDGIKNDQSLGAIERSLRSIPGVETIDIYPDINKIAITYIPHMTGPRTFIEVIESTGSGCFKAVIFPNDEGREALRQQEINRYFKLFIWSLAFTIPVFLTSMVLMYIPGVKRVLDVKIVNMLNIGLLLRCDFATPVQFIIGRRFYVGAYKALRKGSANMDVLIALGTNAAYFYSLYVVERSVFSRHFKGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMNLTPETAILLTQDDKGDVVSEKQIDIRLIQKDDVIKVVPGSKVASDGFVIWGQSHVNESMITGEGRPVAKRRGDMVIGGTMNENGVMHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSLSTWLSWFLAGKLHAYPKSWIPSSMNYFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPMVVTTKLFKKMSIKDFYEFTAAAEVNSEHPIAKAIVEHAKKITEEQNHSWPEAHNFVSVSGHGVKAIVLNKDILVGNKKMMLDHNISISADAEEILAEAESLAQTGILVSLDGEVAGVLAVSDPLKPGANEVISILNSMKIKSIMVTGDNWGTANSIARQAGIETIIAEAQPETKATKIKELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLANKTFSRIRLNYFWALGYNILAIPIAAGILYSSTRFRLPPWIAGAAMAASSLSVVCSSLLLKNYKRPSKLNNMEINGVKIE 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2428g00030 851 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Vium2428g00030 851 PRINTS Copper-transporting ATPase 1 signature 159 180 - -
Vium2428g00030 851 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Vium2428g00030 851 PRINTS Copper-transporting ATPase 1 signature 194 214 - -
Vium2428g00030 851 PRINTS Copper-transporting ATPase 1 signature 214 239 - -
Vium2428g00030 851 NCBIfam heavy metal translocating P-type ATPase 231 831 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vium2428g00030 851 SFLD C1.7: P-type atpase like 500 773 - -
Vium2428g00030 851 Pfam Heavy-metal-associated domain 1 56 IPR006121 GO:0046872
Vium2428g00030 851 ProSitePatterns E1-E2 ATPases phosphorylation site. 520 526 IPR018303 -
Vium2428g00030 851 Gene3D - 63 137 - -
Vium2428g00030 851 ProSiteProfiles Heavy-metal-associated domain profile. 67 133 IPR006121 GO:0046872
Vium2428g00030 851 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 849 - -
Vium2428g00030 851 Gene3D - 1 62 - -
Vium2428g00030 851 CDD P-type_ATPase_Cu-like 159 818 - -
Vium2428g00030 851 FunFam Probable copper-transporting ATPase HMA5 631 779 - -
Vium2428g00030 851 SFLD p-type atpase 500 773 IPR044492 -
Vium2428g00030 851 Pfam haloacid dehalogenase-like hydrolase 514 736 - -
Vium2428g00030 851 SUPERFAMILY Calcium ATPase, transmembrane domain M 269 510 IPR023298 -
Vium2428g00030 851 ProSiteProfiles Heavy-metal-associated domain profile. 1 58 IPR006121 GO:0046872
Vium2428g00030 851 SUPERFAMILY HAD-like 517 828 IPR036412 -
Vium2428g00030 851 SUPERFAMILY Calcium ATPase, transduction domain A 318 404 IPR008250 -
Vium2428g00030 851 CDD HMA 83 129 IPR006121 GO:0046872
Vium2428g00030 851 FunFam Copper-transporting ATPase 1, putative 286 408 - -
Vium2428g00030 851 Gene3D - 525 601 IPR023299 GO:0000166
Vium2428g00030 851 Gene3D - 602 653 IPR023299 GO:0000166
Vium2428g00030 851 SUPERFAMILY HMA, heavy metal-associated domain 1 64 IPR036163 GO:0046872
Vium2428g00030 851 Gene3D - 286 408 - -
Vium2428g00030 851 CDD HMA 1 57 IPR006121 GO:0046872
Vium2428g00030 851 SUPERFAMILY HMA, heavy metal-associated domain 62 132 IPR036163 GO:0046872
Vium2428g00030 851 PRINTS Copper-transporting ATPase signature 216 235 - -
Vium2428g00030 851 PRINTS Copper-transporting ATPase signature 268 287 - -
Vium2428g00030 851 PRINTS Copper-transporting ATPase signature 288 306 - -
Vium2428g00030 851 PRINTS Copper-transporting ATPase signature 699 716 - -
Vium2428g00030 851 PRINTS Copper-transporting ATPase signature 795 809 - -
Vium2428g00030 851 PRINTS Copper-transporting ATPase signature 427 441 - -
Vium2428g00030 851 PRINTS P-type cation-transporting ATPase superfamily signature 745 757 - -
Vium2428g00030 851 PRINTS P-type cation-transporting ATPase superfamily signature 647 658 - -
Vium2428g00030 851 PRINTS P-type cation-transporting ATPase superfamily signature 354 368 - -
Vium2428g00030 851 PRINTS P-type cation-transporting ATPase superfamily signature 722 741 - -
Vium2428g00030 851 PRINTS P-type cation-transporting ATPase superfamily signature 669 679 - -
Vium2428g00030 851 PRINTS P-type cation-transporting ATPase superfamily signature 518 532 - -
Vium2428g00030 851 FunFam ATPase copper transporting beta 1 62 - -
Vium2428g00030 851 Pfam E1-E2 ATPase 300 496 - -
Vium2428g00030 851 Gene3D - 485 779 IPR023214 -
Vium2428g00030 851 NCBIfam HAD-IC family P-type ATPase 271 804 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2428g00030 Vium-Chr2428 117874 121946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2428g00030 1 851 Primary Pumps ATPases AT1G63440 72.780 0.0 1298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2428g00030 K17686 - gmx:100817431 1476.07