Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2428g00020 ATGGATGGAAGAGAAGGTATGGGTTTTCCTGGCGGCTCTGCTCCATATTACATGCAGCATAGAGGAGGGGTTAGTGGGTCTGGTCCTGGAACTGGAACGCCCTCTGGGTTCCAACCACCTTCTGGGTTCAGAGCTTTGTCTAATGTCTCATCAGGTTCTACATTCTCATTAGAAGCTAAGCCTCCGTCTCAACCTCAGCCTCAGCGGGGAGGTTTCGGTCATGGAATTAACTTAGGTTCCTCTCCTGGAATTAACTTAGGTTCCTCACCTGACGGTGGAGGCGGTGGTGGAATGTCTTCTTCTGGTGACCCTGTGAAAAAGAAAAGAGGGAGGCCAAGAAAGTATGGTCCTGATAGTGGGACTGTTTCCCTGAGACTCTCTCCCTTGTCTGCCACTGCTAATTCCACCCCAGGATCAGGCACTCCCTCAGAGAAACGGCCTAGAGGGCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTTGCTAATTTAGGTGAATGGATGAACAGTTCTGCAGGACTAGCCTTTTCACCTCATGTTATCACTGTTGGAGTTGGGGAGGATATTGTAGCAAAGTTATTCTCATTTTCACAGCAGAGGCCAAGGGCTTTGTGCATCTTAACTGGAACTGGTACAGTTTCTTCTGTCACTCTGCGCCAGCCAGCTTCTACTACCATCAGTGCTTCTTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTCGCTGAAGAAGGTGGACCACGCAGTAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCCGATGGTCATATTATTGGTGGTGGTGTTGCCAGCCTTATAGCTGCAAGCCCAGTCCAGGTGGTAGTGTGCAGTTTTGTATATGCAGGCTCTAAGCCAAAGACTAAACAAGTGACCACTGCTACAAAAGATAACAATTCTGAACCTCAGAGTAGTGACAAGTTAGCTTCTCCAGCCAGTGCTCCTCCTAATCAAAACTACTCTTCTCCTGCCCCAGGCATGTGGCCTGCTCAATCAAGGCCGTTAGAGGTGAAAAGTGCACATCCACACACTGGTATTGACTTGACGCGTGGGTGA 1086 0.4917 MDGREGMGFPGGSAPYYMQHRGGVSGSGPGTGTPSGFQPPSGFRALSNVSSGSTFSLEAKPPSQPQPQRGGFGHGINLGSSPGINLGSSPDGGGGGGMSSSGDPVKKKRGRPRKYGPDSGTVSLRLSPLSATANSTPGSGTPSEKRPRGRPPGSGRKQQLANLGEWMNSSAGLAFSPHVITVGVGEDIVAKLFSFSQQRPRALCILTGTGTVSSVTLRQPASTTISASYEGRFQILCLSGSYLVAEEGGPRSRTGGMSVSLSSPDGHIIGGGVASLIAASPVQVVVCSFVYAGSKPKTKQVTTATKDNNSEPQSSDKLASPASAPPNQNYSSPAPGMWPAQSRPLEVKSAHPHTGIDLTRG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2428g00020 361 MobiDBLite consensus disorder prediction 298 336 - -
Vium2428g00020 361 MobiDBLite consensus disorder prediction 123 142 - -
Vium2428g00020 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 64 326 IPR039605 GO:0003680
Vium2428g00020 361 MobiDBLite consensus disorder prediction 26 63 - -
Vium2428g00020 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 174 293 - -
Vium2428g00020 361 CDD DUF296 177 289 IPR005175 -
Vium2428g00020 361 ProSiteProfiles PPC domain profile profile. 169 311 IPR005175 -
Vium2428g00020 361 MobiDBLite consensus disorder prediction 298 361 - -
Vium2428g00020 361 PRINTS AT-hook-like domain signature 106 116 IPR017956 GO:0003677
Vium2428g00020 361 PRINTS AT-hook-like domain signature 143 154 IPR017956 GO:0003677
Vium2428g00020 361 MobiDBLite consensus disorder prediction 1 158 - -
Vium2428g00020 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 177 290 IPR005175 -
Vium2428g00020 361 Gene3D - 177 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2428g00020 Vium-Chr2428 77413 81515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2428g00020 1 361 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 50.515 2.12e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2428g00020 - - gmx:100790569 533.102