Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2428g00011 ATGGGGAAGGGAAAACCTAGAGCTGTGGAGAAAGGTGTGGTAGGACCTAGTTTGAGTGTAGCATCCTCAACTATACCTGCAGGGCCTGTGTATTACCCTACTGAGGATGAATTCAAGGATCCTTTGGAGTATATTTATAAGATTAGACCTGAGGCTGAGCCTTATGGAATTTGTAAGATTGTGCCTCCGAAGAGTTGGAAACCCCCTTTTGCTTTGGATCTAGACGCTTTCACTTTTCCTACCAAGACTCAGGCCATTCACAAGCTCCAGGCTCGCCCTGCTTCGTGTGACTCCAAGACCTTTGACTTGGAGTACTCTAGGTTTTTGAAGGATCAATGTAGTAAGAAGTCCAGGAAAAGGGTTGTGTTCGAGGGGGCGGAGCTGGACTTGTGTAAGCTATTCAATGCCGTGAAGCGGTATGGTGGTTATGATAAGGTTGTTGATGGGAAGAAATGGGGGGATGTTGCACGGTTTGTGAGGTCCAGTGGCAAGATTTCGGATTGTGCTAAGCATGTTTTGTGTCAGTTGTACCGTGAACACTTGTATGATTACGAGAAATTTTATAACCAGATGAATCAAGGGACAGACCAGAGTTGTAAGACAAGCTTGTATGAGGAGCACAAGAGTGATTGTGGGGTGAAACCTTTGGTGTCAAAGAGGATTCACAAGAGTGTTGATTGTTTAAAACGGAAGGATAGTAAAGTGCAAGGAGAAGATCATGATCAGATTTGTGAGCAATGTAAAAGTGGTCTGCATGGGGAACTGATGCTTTTGTGTGACAGGTGTGATAAGGGATGGCATACATATTGTCTTTCCCCACCGTTGAAGCAAATTCCAATGGGTAATTGGTATTGTTTCAACTGCTTGAATTCTGATCGGGACAGCTTTGGTTTTGTGCCTGGGAAGCACTATTCATTGGAAGCTTTTAGACGGAAAGCGGATCTGTCAAGGAGGAGATGGTTTGGATCAGGGCCTGTTTCAAGGGTGCAAATAGAGAAAAAATTTTGGGATATTGTGGAGGGTTTGGTTGGTGAGGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTTTACGGGAGTGGTTTTCCACGTGTAGCTGATAAAAAACCAGAATCAATTGATGACAAATTATGGGAAGAATACTCAACTAACCCGTGGAATCTTAATAACCTGCCTAAGTTGAAAGGTTCAATGCTCCGAGCTGTTCATCACAATATCACCGGTGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAATCCAGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCTGATCTACTTTTTCAGCTTGTTACTATGCTGAACCCATCTGTATTGCAAGAAAATGGAGTTCCTGTCTACAGTATACTTCAGGAGCCTGGGAATTTCGTTATTACCTTCCCCAGGTCTTACCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCTGCTGACTGGCTACCACATGGTGCTTTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTATCTCACGAGGAGCTTCTTTGTGTAGTAGCCCAGTTTGGTGAAGTTGACGGCAGGGTGTCTTCTTATTTGAAGAAAGAATTGTTGAGAATATCAGTTAAAGAAAAATCTCGAAGAGAGAAACTTTGGAAAACTGGTATTATTAAGTCTTCTCGTATGGCTCCTCGAAAATGTCCCCAATTTGTGGGAACCGAAGAAGATCCAGCATGTATCATATGCCAGCAATATCTCTATCTCTCTGCTGTTGTATGTGGTTGCAGGCCATCGGCTTTTGTTTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGTTAAATTGCGTCTTCTCTATCGTCATTCACTTGCAGAATTGTATGACTTGGCCTATTCTATGGACAAATATACTTCTGAGGGCAAAGCTGAGTGTAGAAGTGTGAAAAGGCAGCCTTCATGTCTCAGTGCTTTGACCAAAAAGGTAAAAGGTGGCTCCATTACTTTTGCTCAACTTGCTACAGAGTGGCTACTGCAATCTAGTACTATTCTTCAAAATGTCTTTTTGCAAGATGCATTTGTTACTGCACTGAGGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGAGACATGGTAAGGAATTTGCTTCAAGCTCAGGAATGGGCAGAAGGGATAAGAGACTGTGTAACAAAAATTGAGTTATGGTTGTGTCATCGAGACACTAGTGTAAAGAAAGTTCATTTAGAATCCGTTGATGAGTTGCTGAAAGTTAGTCCTGCACCTTGCAATGAGCCTTGTTATCCTAAACTGAAGGAGTATGCAGAGGAAGCAAGGTTGTTTGTACAGGAGATTGATACTGCTTTGTCAATGTGTTTAAATATGTCTGAGTTGGAACTTTTACACTCCAAAGCTTGTGGCTTACCCATCTACGTGAAAGAAAATAAGAAATTGGAAGGAAAAATTTCTTCAACCAAGGCATGGCTGGATAGAGTCAGAAACTGCATCTCAGCAAGACACCCTGCTGCACTACATGTTGATGTTTTTTATAAACTAAAAGCAGAGTTTTGGGATCTTCAAGTTCAACTCCCGGAGATAGATGTGCTTCAGAATCTACTAAATGAAGCTGAATCTTGTAGTGCTCAATGTCATGATATGTTAGAAGGACCTATGAATCTCAAGAATGTTAGTTTGCTGCTTAAGGAATGGGAAAATTTTGCAGTTGATGTACCAGAACTCAAGATTCTAAGGCAACACCATTCGGATACTGTTTCATGGGTTTCCCACTGTAATGATGTTTTAGGGAGAGTTCATATGCAAGAAGATCAGCATGATGCAGTTGATAAATTGAATAGTATTTTGGAAGCAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCATTGGTTGAGGTTGAGCTGAAGAAGGCTAAGTGTCGGGAAAAGGCTGTGAAGGCGCATGATTTTAAGATGCCTTTGGAATTCGTCCAGAAACTGTTGAAGGAAGCCACCATGCTTCAAATTGAGCAAGAGAAACAATTTGTCAATCTATCTTGCATGCTTACTGTTGCCATTCCTTGGGAGGAAAGGGCTAGAGAGATGCTTTCACATGGGGCTCCTATTTCGGACTTTGAGGACATGATCAGAGCTTCAGAGAACATATTTGTTATTCTTCCTTCACTTAAAGATGTCAAGGATGCATTATCAGAAGCTAGTTCCTGGTTAAAGAATTCAAAACCATATTTCGTCTCTTCTATGCAAACTTCTGATTCTATGCAGAAAGTTGAGGACTTACAGATGTTGGTATCTCAATCGAAGCATCTTAAAGTATCATTTGAAGAAAGAGGAATGCTTGAATTGGTTTTGAAAAACTGCAGAACATGGGAGTATGAAGCATGTTCTGTACTAGATGATGCCCGGTGCTTATTTGAACTGGATAACTCTCTGCATGAAGTAGACAGTGGTTTAATGTGTAACATGGAAGATTTGATTGTAAGAATCCAATCCACCATAGCATCGGGTATATCACTGGGTTTTGACTTTAGTGAGATTTCAAAACTCCAAGCATCTTGTTCTACGCTGCAGTGGTGCAAAAGGGCCTTGTCTTTCTCCAATTGCTCTCCTTCTTTAGAGGACGTTTTGGAGGTTGCGGAAGGTCTTTCTCATTCCTCTATTTCTGGGGCTCTGTTGAAACTATTAATAGGTGGGCTTGAATGGCTTAGGAAGGCATTAGAGGCGATTTCTGGTCCTTACAATTCTAGAAGATCCAAGTTGACTGAGATACAAGCTATTCTTACTGATTATCAGACAATTAATATGACCTTTACAGCAGTAAATATTCAACTTGAAGATGCCGTTGGAAAACATAAGATGTGGCAAGAGCAAGTGTGCCAATTTTTTGGTCTAAGTTTTAGAGAGCGGTCTTGGTCTTCAATATTGCAGCTCAAGGAGTATGGAGATACCATTGCCTTTGGTTGCTGTGAACTGGATTTGGTTTTATCTGAAGTTAAGAAGGTGGAAAATTGGAAGAAAACGTGCATGGATAAACTAGGAGCTTCAGTGAAAAATGAAAATTCGCTACTTCATGCATTGGAGAAGATGGGACAGACTCTAGATAGATCATTGCTTATGTACGACAAATTGCAAGATATGAAGGAACCAAACCAATGTATCTGCTGCTTTGATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATGCACAATGTGTTGGACTAACAGAAAAAGACGTGGCCATTGAAAACTACCAGTGCCCATATTGTGAAATTCTAAGGGGTGAATTCCGTTATCAGAATGGAGGTGCTCTACTGAGGTTTAAGAAGAAACGTGTTGAACTGAAAGTTCTTACTGAACTCATGTCTGAAGCCGAAAATTTTTGTTTATGGATTGATGAAAGAGATGTTTTGAGTCAACTTGTTGAGAAAGCCCTTCAATGCAAATCTTTCTTGAAAGAAATTGTAATCCTTGCATCAGCTCATGTTGATCAAGATATTTGCATAATCTCTGAAAAATTGGCCACTGTTGTAAAGGCTAGCAACGTGGCTGTTGTCTATGATCAGCACGATACTTGTGATCTTGAGCTTACTTTGGCAAAATTCTTGTGGAAAGCTCAAGTCAATAGAATATTAAATGGTGTACCAAAGCCCACTGTCCAGCGTATTCAGAAGCATCTGAAGGAGGGACTGGCTATGGGCATATCACCTGAAGATCACTATATGTTGAAAATTTCAAATGTGAATAGCTTAGGTTTGCAGTGGACAGAACTAGCCAAAAAGGTGGCATCGGATTATGGGGCACTCGGCCTTGATAAAGTTCTTGAACTTATAGTGGAAGGTGAAAAGTTGCCTGTTGATGCGAATGAGGAACTAAGATTGTTAAGGGCACGATGCATGCTTTATTGTATTTGTCGAAAGCCCTTTGATCCAGAAAGGATGATTGCATGTTGTCGTTGTAATGAGTGGTATCACTTCGATTGCATGAAATTGCCATGCACAAGAGAGGTCTACATTTGTCCCGCGTGTACCCCATGTACGGAAGGATTACCTCCAAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCAAAGACCCCTTCTCCCAGGCATTCAAACCCTAGAAAGAAACAGAAGAGAGACGCACCCAACCTCACTTGCAATACGTTCGCTACCAGGGATCAAGATAGTGAACGTTGGTATCCGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTGTTGAACTTCGAAGTCTTTCTCCATTTATTTGCATACAAAGATAG 5499 0.4132 MGKGKPRAVEKGVVGPSLSVASSTIPAGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLDAFTFPTKTQAIHKLQARPASCDSKTFDLEYSRFLKDQCSKKSRKRVVFEGAELDLCKLFNAVKRYGGYDKVVDGKKWGDVARFVRSSGKISDCAKHVLCQLYREHLYDYEKFYNQMNQGTDQSCKTSLYEEHKSDCGVKPLVSKRIHKSVDCLKRKDSKVQGEDHDQICEQCKSGLHGELMLLCDRCDKGWHTYCLSPPLKQIPMGNWYCFNCLNSDRDSFGFVPGKHYSLEAFRRKADLSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVEVMYGNDLDTSVYGSGFPRVADKKPESIDDKLWEEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQSSAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGAFGADLYQRYHKTAVLSHEELLCVVAQFGEVDGRVSSYLKKELLRISVKEKSRREKLWKTGIIKSSRMAPRKCPQFVGTEEDPACIICQQYLYLSAVVCGCRPSAFVCLEHWEHLCECKTVKLRLLYRHSLAELYDLAYSMDKYTSEGKAECRSVKRQPSCLSALTKKVKGGSITFAQLATEWLLQSSTILQNVFLQDAFVTALRKAEQFLWAGSEMDSVRDMVRNLLQAQEWAEGIRDCVTKIELWLCHRDTSVKKVHLESVDELLKVSPAPCNEPCYPKLKEYAEEARLFVQEIDTALSMCLNMSELELLHSKACGLPIYVKENKKLEGKISSTKAWLDRVRNCISARHPAALHVDVFYKLKAEFWDLQVQLPEIDVLQNLLNEAESCSAQCHDMLEGPMNLKNVSLLLKEWENFAVDVPELKILRQHHSDTVSWVSHCNDVLGRVHMQEDQHDAVDKLNSILEAGLSLKIQVDELPLVEVELKKAKCREKAVKAHDFKMPLEFVQKLLKEATMLQIEQEKQFVNLSCMLTVAIPWEERAREMLSHGAPISDFEDMIRASENIFVILPSLKDVKDALSEASSWLKNSKPYFVSSMQTSDSMQKVEDLQMLVSQSKHLKVSFEERGMLELVLKNCRTWEYEACSVLDDARCLFELDNSLHEVDSGLMCNMEDLIVRIQSTIASGISLGFDFSEISKLQASCSTLQWCKRALSFSNCSPSLEDVLEVAEGLSHSSISGALLKLLIGGLEWLRKALEAISGPYNSRRSKLTEIQAILTDYQTINMTFTAVNIQLEDAVGKHKMWQEQVCQFFGLSFRERSWSSILQLKEYGDTIAFGCCELDLVLSEVKKVENWKKTCMDKLGASVKNENSLLHALEKMGQTLDRSLLMYDKLQDMKEPNQCICCFDDSEDQEFLTCSTCMDCYHAQCVGLTEKDVAIENYQCPYCEILRGEFRYQNGGALLRFKKKRVELKVLTELMSEAENFCLWIDERDVLSQLVEKALQCKSFLKEIVILASAHVDQDICIISEKLATVVKASNVAVVYDQHDTCDLELTLAKFLWKAQVNRILNGVPKPTVQRIQKHLKEGLAMGISPEDHYMLKISNVNSLGLQWTELAKKVASDYGALGLDKVLELIVEGEKLPVDANEELRLLRARCMLYCICRKPFDPERMIACCRCNEWYHFDCMKLPCTREVYICPACTPCTEGLPPNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDAPNLTCNTFATRDQDSERWYPSGIECLRWQNRKPFRRAAKKRVELRSLSPFICIQR 1832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2428g00011 1832 SUPERFAMILY FYVE/PHD zinc finger 1691 1743 IPR011011 -
Vium2428g00011 1832 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Vium2428g00011 1832 FunFam Transcription factor jumonji (JmjC) domain-containing protein 15 118 - -
Vium2428g00011 1832 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Vium2428g00011 1832 Gene3D Cupin 261 553 - -
Vium2428g00011 1832 Pfam PHD-finger 243 290 IPR019787 -
Vium2428g00011 1832 Gene3D Cupin 1434 1611 - -
Vium2428g00011 1832 SMART ARID_2 92 185 - -
Vium2428g00011 1832 MobiDBLite consensus disorder prediction 1751 1777 - -
Vium2428g00011 1832 CDD ARID 97 185 - -
Vium2428g00011 1832 SMART JmjN_1 27 68 IPR003349 -
Vium2428g00011 1832 Gene3D Cupin 14 127 - -
Vium2428g00011 1832 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1150 - -
Vium2428g00011 1832 SUPERFAMILY Clavaminate synthase-like 369 562 - -
Vium2428g00011 1832 FunFam Predicted protein 349 552 - -
Vium2428g00011 1832 SMART PHD_3 1439 1485 IPR001965 -
Vium2428g00011 1832 SMART PHD_3 243 289 IPR001965 -
Vium2428g00011 1832 SMART PHD_3 1696 1738 IPR001965 -
Vium2428g00011 1832 SMART cupin_9 381 547 IPR003347 -
Vium2428g00011 1832 ProSitePatterns Zinc finger PHD-type signature. 1440 1484 IPR019786 -
Vium2428g00011 1832 Pfam ARID/BRIGHT DNA binding domain 104 185 IPR001606 GO:0003677
Vium2428g00011 1832 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Vium2428g00011 1832 SUPERFAMILY FYVE/PHD zinc finger 1436 1485 IPR011011 -
Vium2428g00011 1832 SUPERFAMILY ARID-like 78 200 IPR036431 GO:0003677
Vium2428g00011 1832 SUPERFAMILY FYVE/PHD zinc finger 238 291 IPR011011 -
Vium2428g00011 1832 ProSitePatterns Zinc finger PHD-type signature. 1697 1737 IPR019786 -
Vium2428g00011 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1681 1739 IPR013083 -
Vium2428g00011 1832 CDD PHD_RSF1 244 288 - -
Vium2428g00011 1832 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Vium2428g00011 1832 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Vium2428g00011 1832 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Vium2428g00011 1832 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Vium2428g00011 1832 SMART bright_3 96 190 IPR001606 GO:0003677
Vium2428g00011 1832 MobiDBLite consensus disorder prediction 1751 1765 - -
Vium2428g00011 1832 Pfam jmjN domain 29 62 IPR003349 -
Vium2428g00011 1832 Pfam PLU-1-like protein 989 1179 IPR013637 -
Vium2428g00011 1832 Pfam PLU-1-like protein 1139 1395 IPR013637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2428g00011 Vium-Chr2428 43631 65317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2428g00011 28 92 JUMONJI Transcription Factor Family AT1G08620 56.522 1.50e-09 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium2428g00011 PLU-1 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2428g00011 K11446 - gmx:100789512 3267.25