Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2425g00014 ATGGAGATGAAGGGTTTTGTGTTCAACCAACATCAGCAGCAGCCAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCCAGTGCTTCCTCAGGCAACAGAACTGAAATTGGAACCAGTTACCCTCAACAATACTTGGCTCCACCACCATCTCAGACTCAGCCACCAAAGAAAAAGAGAAACCTCCCTGGTAACCCAGACCCTGATGCTGAAGTTATAGCCTTGTCCCCCAAGAGTCTTCTGGCCACAAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTGCAACTTCACAGAAGAGGGCACAATTTGCCGTGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGGCAAATTGTGTGCATCATGACCCGTCAAGGGCTCTTGGGGACCTGACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCAGTTCAATCAGATTGGAAAGCCCATTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGAGCAATCACTGGCACAGGCAACAACCAACTTCTTCCCCCACAACAGCCTTCTTCCTCTCATCAGCACCACCACCACAACATGACCCTTCAAACCCAATTCAACCCTCAAAATCTCCATGCTTTCTCATTGAAAAAAGAGCAGCAAAGTTTCAATCTTAGGCCAGAAATGCCCCCTTGGCTGGGCCCACCAACAACAGTTGATAATCTCTCCTCGTCCCCATCCATAATGTTCTCTCCCTCTCCACACCAAGAAAACCCTAACCCTAGTCTTGGTCCCACTCTTGCTGCCTACCAAACAGTCCCTAACCCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCTCACCAGCCATGGCAAGGGCCCACCATCAGGTTCACATGACTTCTTCAGCAGATTCTGCCACTGCTCACTTTGGCTTGAACTTGTCCTCACGTGATCAAGACAACACCACCACCACTTCAACAGCACCAACCACTGTTACGACTAACACTCCTACAGTGTTTAGCCATGGCTTGTTATCATCATCATCATCATCACCTTTGGGGAATAAAGCTGCTGCTGTGTCTTCTGCTCCATCCCTTCTCCATGATGTTATACGCTCTTTCTCTTCTCCCTCTGCCTTCCAAGGAACCCCTTTTGAGGATGCATTTGGTGGCATTCAGAGTTCAAAAAAACTAGATGACGATAGCTTGTATCTGCATGATACCTTCTCAAAAGCAAGTGGTGCAGCAGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTCAGGCCACTCTCTCATAATGATATTCTCACCATTGCTGGCATTGGAAACTGCATTCATGATCAGCAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1575 0.4775 MEMKGFVFNQHQQQPVVEENMSNLTSASGEASASSGNRTEIGTSYPQQYLAPPPSQTQPPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEANCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTGNNQLLPPQQPSSSHQHHHHNMTLQTQFNPQNLHAFSLKKEQQSFNLRPEMPPWLGPPTTVDNLSSSPSIMFSPSPHQENPNPSLGPTLAAYQTVPNPSPHMSATALLQKAAQMGATMSRSGSSPAMARAHHQVHMTSSADSATAHFGLNLSSRDQDNTTTTSTAPTTVTTNTPTVFSHGLLSSSSSSPLGNKAAAVSSAPSLLHDVIRSFSSPSAFQGTPFEDAFGGIQSSKKLDDDSLYLHDTFSKASGAAGNEGLTRDFLGLRPLSHNDILTIAGIGNCIHDQQNQSQKPWQG 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2425g00014 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Vium2425g00014 524 MobiDBLite consensus disorder prediction 379 400 - -
Vium2425g00014 524 MobiDBLite consensus disorder prediction 7 51 - -
Vium2425g00014 524 FunFam protein indeterminate-domain 12-like 69 137 - -
Vium2425g00014 524 Gene3D Classic Zinc Finger 144 223 - -
Vium2425g00014 524 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Vium2425g00014 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 502 IPR031140 -
Vium2425g00014 524 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Vium2425g00014 524 MobiDBLite consensus disorder prediction 1 75 - -
Vium2425g00014 524 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Vium2425g00014 524 SMART c2h2final6 131 161 IPR013087 -
Vium2425g00014 524 SMART c2h2final6 166 186 IPR013087 -
Vium2425g00014 524 SMART c2h2final6 90 112 IPR013087 -
Vium2425g00014 524 Gene3D Classic Zinc Finger 71 140 - -
Vium2425g00014 524 MobiDBLite consensus disorder prediction 227 248 - -
Vium2425g00014 524 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2425g00014 Vium-Chr2425 51703 54990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2425g00014 21 524 IDZ Gene Family AT3G13810 47.340 1.12e-138 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2425g00014 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2425g00014 K25870 - gmx:100808344 779.63