Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2425g00001 ATGCAGCCGAAATCTCACACCCCTTTTTTTCTTCCTCCCCAAAAGGCCATGAACAACAATAACAACAACACCAGCACCATTACAACCACCAACACCAACACCAACACCAAAACCAACAACAGAATCTCCTCTACAAGAAATGGCAACAGCACCACTCAGGCTTGCGCTGCATGCAAGTACCAACGCAGAAAGTGTGCACCCGACTGCATTCTCGCACCGTATTTCCCTCACGATCGACAGCGCCAGTTCCTCAACGCTCACAAGTTGTTCGGAGTAAGCAACATCACCAAAATCATTAAGGTTGTCAGCCCTCGCGACAAGGACCAAGCCATGCGTACCATAATCTACCAATCCGACATGCGTGCCTCGGACCCTGTCGGAGGCTGCTACAGGTACATTGTCGACCTGCAGACTCAGATTGAGTACTGCCGAGCCGAGCTGGACCTCGTCCTTCAGCAACTCGCCATGTTTCGAGCTCAGGCTCAGCACCAGAATCAGCACCAGTATCAGCACCAGCACGGTATCTATGCTCCCAACAGCGTTAACGTCACCGTCAATGGAGATGGTGAGGTTTTGAACGCCGACCCGATGGGGCTGTACGGCCAGCCACAGTATCAGTGTCTGCAGCCGCACCAACAGGAGCAGTATGTTATGATGCATGAAAATGGAAGCCAGAACTTCAACGGCGCCACCCCTTTGCAGGAACAGATGAACACGTGGGCTGTGCAGAACACTGCTGTGTCGCTTTCTTCGTTGTCGTTGCAAGGACAGAGTAGTAATGTTAGCGATGAATACGATCACAAGGCCGTCATTGACATTGATTCTGATGAGAGAAGTGAGTTAGGGTTCGAGTCTGAAGAATTAGTCCATCGCAGTGATGAATCAGTGTTGTTTAAGATAGATGATGCAGTAATAAAAGCTGAGGGTGACTGCATGCAACAAGCTCAAGATCATGATTTGAAAGGTGCAGCAACATCGTTTAGCCTCACAAATTGTACTTGCTGA 1005 0.4965 MQPKSHTPFFLPPQKAMNNNNNNTSTITTTNTNTNTKTNNRISSTRNGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKVVSPRDKDQAMRTIIYQSDMRASDPVGGCYRYIVDLQTQIEYCRAELDLVLQQLAMFRAQAQHQNQHQYQHQHGIYAPNSVNVTVNGDGEVLNADPMGLYGQPQYQCLQPHQQEQYVMMHENGSQNFNGATPLQEQMNTWAVQNTAVSLSSLSLQGQSSNVSDEYDHKAVIDIDSDERSELGFESEELVHRSDESVLFKIDDAVIKAEGDCMQQAQDHDLKGAATSFSLTNCTC 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2425g00001 334 ProSiteProfiles LOB domain profile. 53 154 IPR004883 -
Vium2425g00001 334 Pfam Lateral organ boundaries (LOB) domain 54 149 IPR004883 -
Vium2425g00001 334 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 52 209 - -
Vium2425g00001 334 MobiDBLite consensus disorder prediction 1 46 - -
Vium2425g00001 334 MobiDBLite consensus disorder prediction 12 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2425g00001 Vium-Chr2425 27574 29400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2425g00001 53 287 AS2 family AT3G13850 51.064 6.67e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium2425g00001 LOB 7.7e-36 No_clan