Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2424g00008 ATGGAGGGTAAGTGTTTTTTATCTCTTTTCTCTTGTTTTTTACTTTTTTTGCTTGTTCTACTACAGGCGCCGACTGGAAATGGATCAAATGATAGAATGAATAATGGAGAGATAAAGTTAATAGTAAGGATACCCATGAGCGATTTCCCTCAGTTTGTGGATATAGTTTGGGAGCCTTCTCAGCAAAAGTACACGGCATCTGGATATTGCATGGATGTTTTCAATGCCGCTGTTACCTACTTACCCTTCAATGTTTCTCTACGTGTTTTACCTGCTGTTGTTGACTCAAGCCAGGTTTATAAAACACACCATGCAAGTCCAAAACAAATCTTAACAGAGAGCGAAGTTGTGGTAGGAGATGTGACGATCCTGGCCAACCGTTCGAAGTTTGTAGATTTCACAGTACCATATATTGCATCAGGTGTTAAAATGGTAGTACCAGTTAAACACGGGAGGGATCAAACCATGTGGACTTTTGTTAAACCCTTCAGTTGGGATCTTTGGCTGAGCATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTCATCATGGAAAGAAACGTGAACGCTCTGCCTAATCAAGAGGGTTCTCCAAATCAAAAAAAGCTTTGCCCTGCAACCATCTTGTGGTTTCCATTATCACAAGCCATTCTTCCTGAAAGAGAAGTAGTGGTAAAGAGCTGCTCAAGATTTGTGCTGATGGTTTGGCTTCTACTGGCGTTCGTCCTCATGCAAAGTTACACTGCTAACTTGACTTCTATATTGACCTTAGATCAACTGCGACCCAGTTTTCTGAACCTTAATGATATAAGGAGAAGGGGTTACTACGTTGGATACCAGTCTGAGTCTTTTGTTTACGATGTCTTGATTGACCAATTTAAGTTTGACCCATCCAAACTAAGGCCGTACAGAAACATTGCCGAGTACCATGATGCTCTAGAGCTTGGAAGCCAAAATGGGGGTGTTGCAGCTATATTCGACGAAGTTCCCTACCTTAAAATTTACCTTCAAGAATACGGATCCAATTACGTTATGTCTGGCCCCGAATATAGAAATGCTGGGTTTGGTTTTGTATTCCCGTTAAATTCCAATCTCACGGCTTACTTTTCGACAGCAATCCTGGATGTGATTGAAAGTGGAATAATGAATGAGATTGAGGAAAAATATTTTGGAAAGAATTATATTGGAGGAGAAGTTTCGTCTGGAGAAATATCTTCTGAAACTCTCAGTCTCAGCTTTCATAGCTTCTCTGGGCTTTTCTTTATTTCTGGGATTTCTACTTTGTTAGCGTTATTGGTTTCAGAAAGATTTATTTGGCAAAGGCTCATTTTGATGGCTAAAGCATTGACTGAGATTATGTCCCCAATTCCTCTTTTCAAGAAGAAAACACGTACTCATCCAATTCATGATTCTACTCATGGAACGGAGGCTTAA 1437 0.4022 MEGKCFLSLFSCFLLFLLVLLQAPTGNGSNDRMNNGEIKLIVRIPMSDFPQFVDIVWEPSQQKYTASGYCMDVFNAAVTYLPFNVSLRVLPAVVDSSQVYKTHHASPKQILTESEVVVGDVTILANRSKFVDFTVPYIASGVKMVVPVKHGRDQTMWTFVKPFSWDLWLSIIIISTFIGLAILIMERNVNALPNQEGSPNQKKLCPATILWFPLSQAILPEREVVVKSCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLRPSFLNLNDIRRRGYYVGYQSESFVYDVLIDQFKFDPSKLRPYRNIAEYHDALELGSQNGGVAAIFDEVPYLKIYLQEYGSNYVMSGPEYRNAGFGFVFPLNSNLTAYFSTAILDVIESGIMNEIEEKYFGKNYIGGEVSSGEISSETLSLSFHSFSGLFFISGISTLLALLVSERFIWQRLILMAKALTEIMSPIPLFKKKTRTHPIHDSTHGTEA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2424g00008 478 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 442 IPR015683 -
Vium2424g00008 478 SMART GluR_14 39 393 IPR001320 GO:0015276|GO:0016020
Vium2424g00008 478 Gene3D - 31 156 - -
Vium2424g00008 478 Gene3D - 337 397 - -
Vium2424g00008 478 SUPERFAMILY Periplasmic binding protein-like II 9 394 - -
Vium2424g00008 478 Gene3D - 157 293 - -
Vium2424g00008 478 Pfam Bacterial extracellular solute-binding proteins, family 3 115 393 IPR001638 -
Vium2424g00008 478 Pfam Ligand-gated ion channel 394 426 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2424g00008 Vium-Chr2424 96167 98089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2424g00008 35 434 Ion Channels AT2G29120 38.308 2.67e-73 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2424g00008 K05387 - gmx:100807817 585.874