Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2424g00007 ATGTGTAAGTGCTTCTCGTCCCTTTTCTCTCTGTTTTTTATTTTTTTGTTTGTGCTTCAACAAGCATCAACGGGGAATGCGTCAAATGCATCATCAGAGTATGAAGAGATCAAGTTGAGAGTAGGGGTGCCCAGGAAAAATGGTTTCCAACAATTTGTGCATGTAATTGGGGAAACTTCTCAAGAAAATTACAACATATCAGGATATTGCATGGAGGTTTTCAATGCCGTCATAACCCATTTACCCTTCAATGTGTCTCTACATGTTGAACCTCATGATATTGACTCAAGTGAGGGTTCTGGATACGACGCTCTTCTAAAACTAATTCCGTCATCAAAGTATGATGTCGTGGTCGGAGATATAACCATCCTAGCCAACCGTTCGAAGTTTGTAGATTTCACAGTGCCTTATACTGGATCGGGAGTTAAAATGGTAGTACCTGTTCGACATGGGAGGGATAAAAACATGTGGACTTTTGTCAAACCCTTCAGTTGGGATCTTTGGTTGAGCATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTCATCATGGAAAGAAACGTAAACGCTCTGCCTAATCAAGAGGGTTCTCCAAATCAAAAAAAGTTTCACCCTGCTACCTTCTTATGGTTTCCAATCTCACAAGCCATTCTTCCTGAAAGACAAGTAGTAGTAAAAAGCTGCTCAAGATTTGTGCTGATGGTTTGGCTTCTATTGGCGTTCGTCCTCATGCAAAGTTACACTGCGAACTTGACTTCTATATTGACCTTGGATCAACTGCAACCAAGCTTTCTCAACGTGAATGACTTAAGAAAAGGGGGCTATTACGTTGGATACCAAACGGGGTCTTTCGTTCACGACGTGTTGGTTAAGCAATTTAAGTTTGACCCTTCTAAACTGAAGCCATACAACACCAGTTGCGAGTATCACGATGCTCTAAAGCTTGGAAGCCAAAACGGGGGTGTTGCAGCTATATTCGATGAAGTTCCCTACCTTAAAATCTACCTTCAAGAATACGGATCCAATTACATTATGTCTGGCCCCAAATATAGAAATGCTGGGTTTGGTTTTGCACTCCCTTTAAACTCGAATCTCACGGCGTACTTTTCGAGAGCCATCTTGAGTGTGACTGAAAGTGATTTGATGAATGAAATTGAAGAAAAATATTTTGGGAAGAATGAAGTTGGTGAACAAAACTCGTCTGAGGAAGCATCTTCTGCTCCTCTAAGTCTCAGCTTTCATAGCTTTGAGGGGCTGTTTTTGATTACAGGAATTTCAACTTTTTTTGCACTATTGATATCAGAAAGTGTTTTATGGCAAAAGCCCATTTTGATGGCTAAAGCATTGAGTCGAAGGTATTTGTCCTTCGTGGCGCCTACCACGGAAATACGCGTTCATCCAACTCATGATTCAACTCACGGTATAGAGGTCGTTTAG 1440 0.4118 MCKCFSSLFSLFFIFLFVLQQASTGNASNASSEYEEIKLRVGVPRKNGFQQFVHVIGETSQENYNISGYCMEVFNAVITHLPFNVSLHVEPHDIDSSEGSGYDALLKLIPSSKYDVVVGDITILANRSKFVDFTVPYTGSGVKMVVPVRHGRDKNMWTFVKPFSWDLWLSIIIISTFIGLAILIMERNVNALPNQEGSPNQKKFHPATFLWFPISQAILPERQVVVKSCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLQPSFLNVNDLRKGGYYVGYQTGSFVHDVLVKQFKFDPSKLKPYNTSCEYHDALKLGSQNGGVAAIFDEVPYLKIYLQEYGSNYIMSGPKYRNAGFGFALPLNSNLTAYFSRAILSVTESDLMNEIEEKYFGKNEVGEQNSSEEASSAPLSLSFHSFEGLFLITGISTFFALLISESVLWQKPILMAKALSRRYLSFVAPTTEIRVHPTHDSTHGIEVV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2424g00007 479 CDD GluR_Plant 38 391 - -
Vium2424g00007 479 Gene3D - 31 156 - -
Vium2424g00007 479 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 442 IPR015683 -
Vium2424g00007 479 SUPERFAMILY Periplasmic binding protein-like II 11 394 - -
Vium2424g00007 479 SMART GluR_14 38 393 IPR001320 GO:0015276|GO:0016020
Vium2424g00007 479 Pfam Ligand-gated ion channel 394 426 IPR001320 GO:0015276|GO:0016020
Vium2424g00007 479 Pfam Bacterial extracellular solute-binding proteins, family 3 62 393 IPR001638 -
Vium2424g00007 479 Gene3D - 157 296 - -
Vium2424g00007 479 FunFam Glutamate receptor 2.7 34 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2424g00007 Vium-Chr2424 89776 91673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2424g00007 38 434 Ion Channels AT5G11210 38.806 1.61e-88 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2424g00007 K05387 - gmx:100807817 685.256