Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2424g00004 ATGGGATCCTCATTCAGTTGCTGTGGCTCAGAGAAGGTCGAAGAAGTGCCAACATCATTTGGCGTGGTTAACAATTCATGGAGAATATTCACGTACAAGGAGCTGCATGCGGCTACCAACGGATTCAGTGATGATAACAAGCTTGGGGAAGGTGGTTTTGGAAGCGTGTACTGGGGAAGAACCAGTGACGGTCTTCAGATAGCGGTAAAGAAACTGAAAGCAATGAACTCGAAGGCAGAGATGGAATTTGCTGTAGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAAAAACTTGCTGGGTCTCAGGGGCTATTGTGTTGGGGATGATCAACGCCTCATCGTTTACGATTACATGCCAAATCTCAGCCTCATATCTCATCTCCATGGCCAGTTTGCTGTTGAAGTGCAACTGAACTGGCAAAGGAGAATGAACATTGCAATAGGCTCTGCAGAAGGGCTTCTGTACTTGCACAGTGAGGTGACACCACACATCATACACAGGGATGTGAAAGCAAGTAACGTGCTTCTGAATTCAGAGTTTGAGCCTCTAGTTGCGGATTTTGGGTTTGCAAAACTAATCCCAGAAGGAGTTAGCCATATGACTACCCGTGTGAAGGGTACATTGGGATACTTGGCACCTGAATATGCGATGTGGGGGAAGGTTTCGGAAAGTTGTGATGTGTATAGCTTTGGAATTCTGCTGTTGGAACTTGTGAGTGGAAGAAAGCCCATAGAGAAGCTCCCTGGTGGGCTTAAGAGAACAATAACTGAGTGGGCCGAGCCTCTAATAAGCAAAGGAAAGTACAGGGAGCTGGTTGATCCAAAACTGAGGGGGAACTTTGATGAAAACGAAGTGAAACAAGCAATCAATGTGGCTGCTCTTTGCGTGCAGAATGAGCCTGAAAAACGACCCAACATGAAGCGTGTTGTTAACCTTCTTAAAGGGCAAGAATCTGAAGAGAAGAAAGTGAGTGTGACGAGGATCGACAGTATCAAGTACACTGAAGAATTATTGGCACTTGATGAGCCCAGTGATGAAGAACTTGATGATGCAACTGCTAGTTATGGTGTTTTCAGTGCCATTGAAGTCCAAAACATGAAGGATCCATATAACCGTGGGAACTACAAGAAAATCGGTTAA 1140 0.4526 MGSSFSCCGSEKVEEVPTSFGVVNNSWRIFTYKELHAATNGFSDDNKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLISHLHGQFAVEVQLNWQRRMNIAIGSAEGLLYLHSEVTPHIIHRDVKASNVLLNSEFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVSGRKPIEKLPGGLKRTITEWAEPLISKGKYRELVDPKLRGNFDENEVKQAINVAALCVQNEPEKRPNMKRVVNLLKGQESEEKKVSVTRIDSIKYTEELLALDEPSDEELDDATASYGVFSAIEVQNMKDPYNRGNYKKIG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2424g00004 379 SUPERFAMILY Protein kinase-like (PK-like) 26 315 IPR011009 -
Vium2424g00004 379 Pfam Protein tyrosine and serine/threonine kinase 45 313 IPR001245 GO:0004672|GO:0006468
Vium2424g00004 379 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Vium2424g00004 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vium2424g00004 379 CDD STKc_IRAK 48 315 - -
Vium2424g00004 379 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2424g00004 379 ProSiteProfiles Protein kinase domain profile. 42 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2424g00004 379 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 325 - -
Vium2424g00004 379 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 117 - -
Vium2424g00004 379 Gene3D Transferase(Phosphotransferase) domain 1 118 333 - -
Vium2424g00004 379 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 331 - -
Vium2424g00004 379 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2424g00004 Vium-Chr2424 42768 44362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2424g00004 1 348 Trihelix Transcription Factor Family AT1G70460 43.836 6.07e-96 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vium2424g00004 PK_Tyr_Ser-Thr 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2424g00004 - - gmx:100783365 695.656