Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2424g00003 ATGGTACTTCCCTCCCCTGCCAAAATACTCATTGGCCTCTCCTTAGACCCAGAGGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTTGCCAATCCAAATGACACCATTGTGGCTGTGCATGTTCTTGTTATTGCGGATAAGAAGAAGCGAGTCTCCGTCAGAAAAAGGCAATCACAACTTAGACAAGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCAAGGGTGGCACTCAATTCCACAGTTGGTGAAGGTTTAGTGGAGGAAACCAAGTCCATCAACGCGGACTTTCTTCTTATTCGTGGCTCAAGAAACCAAACTAATAAAAATGGGAGTTCTAAAGGAATTGCCACGTATTGCTTTGAGCATGCACATGAAGGGTGCACAATGGTCTCAGTCGGAAGTCGTGGTAAGGCAGATCAAAGTGTCAAACAAAACTCAACTCATTGTCAAGTAGATAACAGACAACCAAATTCAAGACGGTTTAAGAAGGAAAAGCAATGTGACAAGGGTGCCTCCCCTGTTCTGGAGGATTATTTATCAGGAATCAAGGCTCAGAACCGTTCACCAAGAACAGTACTAAATGGTCTAGAGGGACAATCAAACAGCACAGAAGATGATACCTTTAGCACTAGGGTCTCAAGCACCACTTATACCCCATCCTTGGATTCTAAGATTAAGAACCGATCCAAGATTAAACCACAGTTCTCATTTAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTTAACATTTATAGAAGTGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAAATATCCAATGCTACCAACGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTATTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAATTGGGTGTTATTGGACATGTCTGTCATCCAAATACTGCAACTTTAGTGGGCTGCTGCATTGAAAATGGGCTATATCTGATTTTCAATTACTCTCAAAATGGAAATTTAGCAACTTCATTGCACGGCAAAGGAGGAGATTCACTTGACTGGCCAATCAGGTACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACACCGGATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGATTATGAACCACAGATTGCTGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAACAGAACCTTCTCTTATGGGCAAAGCCTCTGATGGAATCAGGGAACATTGTTGATCTTGCTGATCCAAGAATGGAAGGTAAATATGATGGAGAACAACTGTACAGGGTAGTGCTGGCGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGCGAGGTGCTGGAGCTGTTAACCAGTGGAGAAGACAGTGAGGTTGGAAAAAGCTGGAGGATCCCAAAGTTCACCTCTGATGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTACCCTCAGACCTATCTTTGGAGGATTATTTGTGA 1821 0.43 MVLPSPAKILIGLSLDPEDSKELLSWAIRVLANPNDTIVAVHVLVIADKKKRVSVRKRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSTVGEGLVEETKSINADFLLIRGSRNQTNKNGSSKGIATYCFEHAHEGCTMVSVGSRGKADQSVKQNSTHCQVDNRQPNSRRFKKEKQCDKGASPVLEDYLSGIKAQNRSPRTVLNGLEGQSNSTEDDTFSTRVSSTTYTPSLDSKIKNRSKIKPQFSFRFIVSFLASPFRRKNFNIYRSEKRQPLLKCFSYEQISNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATSLHGKGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQIADFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIVDLADPRMEGKYDGEQLYRVVLAASYCVRQTATWRPPMSEVLELLTSGEDSEVGKSWRIPKFTSDELDDYSMVFGYDVPSDLSLEDYL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2424g00003 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Vium2424g00003 606 Gene3D Phosphorylase Kinase; domain 1 260 372 - -
Vium2424g00003 606 SUPERFAMILY Protein kinase-like (PK-like) 270 563 IPR011009 -
Vium2424g00003 606 CDD USP_Like 8 140 - -
Vium2424g00003 606 MobiDBLite consensus disorder prediction 158 182 - -
Vium2424g00003 606 FunFam Putative receptor-like serine/threonine-protein kinase 263 372 - -
Vium2424g00003 606 Gene3D Transferase(Phosphotransferase) domain 1 374 576 - -
Vium2424g00003 606 Pfam Protein kinase domain 296 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2424g00003 606 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Vium2424g00003 606 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 140 - -
Vium2424g00003 606 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 373 577 - -
Vium2424g00003 606 MobiDBLite consensus disorder prediction 208 229 - -
Vium2424g00003 606 ProSiteProfiles Protein kinase domain profile. 296 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2424g00003 606 PANTHER OS08G0249100 PROTEIN 60 576 IPR046958 -
Vium2424g00003 606 SMART serkin_6 296 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2424g00003 606 Pfam Universal stress protein family 8 140 IPR006016 -
Vium2424g00003 606 Gene3D HUPs 4 148 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2424g00003 Vium-Chr2424 35893 39658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2424g00003 284 602 Trihelix Transcription Factor Family AT1G70460 40.356 3.89e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium2424g00003 PK_Tyr_Ser-Thr 5.4e-40 CL0016