LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2424g00002	ATGGTACTTCCCTCCCCTGCCAAAATACTCATTGGCCTCTCCTTAGACCCAGAGGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTTGCCAATCCAAATGACACCATTGTGGCTGTGCATGTTCTTGTTATTGCGGATAAGAAGAAGCGAGTCTCCGTCAGAAAAAGGCAATCACAACTTAGACAAGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCAAGGGTGGCACTCAATTCCACAGTTGGTGAAGGTTTAGTGGAGGAAACCAAGTCCATCAACGCGGACTTTCTTCTTATTCGTGGCTCAAGAAACCAAACTAATAAAAATGGGAGTTCTAAAGGAATTGCCACGTATTGCTTTGAGCATGCACATGAAGGGTGCACAATGGTCTCAGTCGGAAGTCGTGGTAAGGCAGATCAAAGTGTCAAACAAAACTCAACTCATTGTCAAGATAACAGACAACCAAATTCAAGACGGTTTAAGAAGGAAAAGCAATGTGACAAGGGTGCCTCCCCTGTTCTGGAGGATTATTTATCAGGAATCAAGGCTCAGAACCGTTCACCAAGAACAGTACTAAATGGTCTAGAGGGACAATCAAACAGCACAGAAGATGATACCTTTAGCACTAGGGTCTCAAGCACCACTTATACCCCATCCTTGGATTCTAAGATTAAGAACCGATCCAAGATTAAACCACAGTTCTCATTTAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTTAACATTTATAGAAGTGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAAATATCCAATGCTACCAACGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTATTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAATTGGGTGTTATTGGACATGTCTGTCATCCAAATACTGCAACTTTAGTGGGCTGCTGCATTGAAAATGGGCTATATCTGATTTTCAATTACTCTCAAAATGGAAATTTAGCAACTTCATTGCACGGCAAAGGAGGAGATTCACTTGACTGGCCAATCAGGTACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACACCGGATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGATTATGAACCACAGATTGCTGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAACAGAACCTTCTCTTATGGGCAAAGCCTCTGATGGAATCAGGGAACATTGTTGATCTTGCTGATCCAAGAATGGAAGGTAAATATGATGGAGAACAACTGTACAGGGTAGTGCTGGCGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGCGAGGTGCTGGAGCTGTTAACCAGTGGAGAAGACAGTGAGGTTGGAAAAAGCTGGAGGATCCCAAAGTTCACCTCTGATGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTACCCTCAGACCTATCTTTGGAGGATTATTTGTGA	1818	0.4301	MVLPSPAKILIGLSLDPEDSKELLSWAIRVLANPNDTIVAVHVLVIADKKKRVSVRKRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSTVGEGLVEETKSINADFLLIRGSRNQTNKNGSSKGIATYCFEHAHEGCTMVSVGSRGKADQSVKQNSTHCQDNRQPNSRRFKKEKQCDKGASPVLEDYLSGIKAQNRSPRTVLNGLEGQSNSTEDDTFSTRVSSTTYTPSLDSKIKNRSKIKPQFSFRFIVSFLASPFRRKNFNIYRSEKRQPLLKCFSYEQISNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATSLHGKGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQIADFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIVDLADPRMEGKYDGEQLYRVVLAASYCVRQTATWRPPMSEVLELLTSGEDSEVGKSWRIPKFTSDELDDYSMVFGYDVPSDLSLEDYL	605

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2424g00002	605	SUPERFAMILY	Protein kinase-like (PK-like)	269	562	IPR011009	-
	Vium2424g00002	605	CDD	USP_Like	8	140	-	-
	Vium2424g00002	605	ProSitePatterns	Protein kinases ATP-binding region signature.	301	323	IPR017441	GO:0005524
	Vium2424g00002	605	PANTHER	OS08G0249100 PROTEIN	59	575	IPR046958	-
	Vium2424g00002	605	Gene3D	Transferase(Phosphotransferase) domain 1	373	575	-	-
	Vium2424g00002	605	MobiDBLite	consensus disorder prediction	154	169	-	-
	Vium2424g00002	605	MobiDBLite	consensus disorder prediction	207	228	-	-
	Vium2424g00002	605	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	8	140	-	-
	Vium2424g00002	605	ProSiteProfiles	Protein kinase domain profile.	295	570	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2424g00002	605	SMART	serkin_6	295	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2424g00002	605	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	416	428	IPR008271	GO:0004672\|GO:0006468
	Vium2424g00002	605	Pfam	Protein kinase domain	295	504	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2424g00002	605	FunFam	Probable receptor-like serine/threonine-protein kinase At5g57670	372	576	-	-
	Vium2424g00002	605	FunFam	Putative receptor-like serine/threonine-protein kinase	262	371	-	-
	Vium2424g00002	605	MobiDBLite	consensus disorder prediction	154	183	-	-
	Vium2424g00002	605	Pfam	Universal stress protein family	8	140	IPR006016	-
	Vium2424g00002	605	Gene3D	Phosphorylase Kinase; domain 1	259	371	-	-
	Vium2424g00002	605	Gene3D	HUPs	4	148	IPR014729	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2424g00002	Vium-Chr2424	35893	39658	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2424g00002	283	601	Trihelix Transcription Factor Family	AT1G70460	40.356	4.53e-74	249

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Vium2424g00002		PK_Tyr_Ser-Thr	5.4e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2424g00002	-		-	gmx:100782832	1098.19