Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2424g00001 ATGGGAATTGAAAAAGGAGGCTTGAAGGGGTTCAGGAGCGGCTGGACCGTGCCGCCAAAGCCATGTGACTCCTGCAAGTTGGCTTCGGCGGCGCTTTTCTGCCGTCCCGATTCCGCTTTTCTCTGCATCGCCTGCGACTCCAAGATTCACTGCGCCAACAAGCTGGCGTCGCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGCGAGCAGGCACCCGCGGCTGTCACGTGCAAGGCTGACGCCGCCGCCCTCTGCATCACGTGTGACTCCGACATCCACTCTGCCAACCCCCTCGCGCGCCGCCACGACCGCGTCCCCGTTGAGCCTTTCTTCGACTCTGCCGAATCCATCGTCAAGGCCTCCGCCGCCGCCTCCTTCGGCTTCATCGTCCCCTCCGACGACGCCACCGCTGCTTCGGATGCCTTTGCACCCGACGACCCCGACGCTGCCGCCTGGCTCATCCCTAACCCCAATTTCGGGTCGAAATTCATGGACGCCCCTGAGATCAAGTCCAAGGAGATCTTCTACTCAGAAATGGACCCCTTCCTCGACTTCGATTACTCAAACTCCTTCCACAACAACAACTCCGGAAACGACAGTGTCGTTCCAGTTCAAACCAAACCTTCCCTCGCTCCTTCCCTCGTCAATAACCACCAACAATCAGAAAGCTGTTTCGACATCGATTTTTGCCGCACCAAACTCTCCTCCTTTAATTACCCATCCCAGTCTCTTAGCCAAAGCGTTTCGTCGTCATCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACCGTGTCGGAGATGTCGTACTCGTTTGGTCGGAACAGTTCGGAATCGAGTGGGATTGGTTTGTCAGGAGTAAGTGGAGGGCAAGGGGCGACGCAGTTGTGTGGGATGGATCGTGAAGCGAGGGTGCTGCGATACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAAACCATTCGATACGCATCGCGGAAGGCTTATGCGGAAACCCGACCCAGGATAAAAGGGCGGTTCGCGAAGCGAGCAGAAATTGACTCTGATGTGGAGCGTCTCTACAGTCCAGGCGCTGCGTCGCTGATGCTGGACAGTCCATACGGCGTGGTACCGTCGTTTTAG 1119 0.5746 MGIEKGGLKGFRSGWTVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCITCDSDIHSANPLARRHDRVPVEPFFDSAESIVKASAAASFGFIVPSDDATAASDAFAPDDPDAAAWLIPNPNFGSKFMDAPEIKSKEIFYSEMDPFLDFDYSNSFHNNNSGNDSVVPVQTKPSLAPSLVNNHQQSESCFDIDFCRTKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSEMSYSFGRNSSESSGIGLSGVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAEIDSDVERLYSPGAASLMLDSPYGVVPSF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2424g00001 372 CDD Bbox1_BBX-like 65 107 - -
Vium2424g00001 372 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Vium2424g00001 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 357 IPR045281 GO:0009909
Vium2424g00001 372 Pfam CCT motif 300 342 IPR010402 GO:0005515
Vium2424g00001 372 CDD Bbox1_BBX-like 21 64 - -
Vium2424g00001 372 SMART bboxneu5 65 107 IPR000315 GO:0008270
Vium2424g00001 372 SMART bboxneu5 17 64 IPR000315 GO:0008270
Vium2424g00001 372 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Vium2424g00001 372 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Vium2424g00001 372 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Vium2424g00001 372 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2424g00001 Vium-Chr2424 20379 22147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2424g00001 1 372 C2C2-CO-like Transcription Factor Family AT5G57660 53.766 9.88e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium2424g00001 zf-B_box 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2424g00001 - - gmx:100805693 627.476