Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2421g00025 ATGGAGGAAGAGTCCTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCGGGCCCAGAGCCTGAAACTGGCCCAATAAGCAATGAAGCTGTGAACTTGGATGAGTGGATAGGAGAGCCTCTTCAGAGAATCAGCGAAGCTGTGAGGTTTAGGGCACGGCAACGGTGGCGATGGCGGCATGTTCCGCTACCGCATCCTGAACTTCATGTCCACATCCCACCTGAAGCTGCGCGGCATTTTCATATACCTCCTGAGGCTCACAATATCTCCATGGAATTGAACCAGTTTCTGGTCAATTCTGGAAATGGAACTGCCTTACAGGCTGGAGAAGGCAGTGTGGCGGCCGAAGAGAGAGTGGAGGAGGTGCCGAAGGCGTGTGAGAATGTGAATGGTGTTGCAGAGGACGAGGCCTTGCAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCACTGATGGGGACTTTTTTGATTGTAACATCTGTTTGGACCTCTCTAGGGATCCTGTTGTGACTTGTTGTGGCCATTTGTTTTGTTGGCCTTGCCTGTATAGGTGGTTGCATCTGCATTCAGATGCGAGAGAGTGTCCAGTTTGCAAGGGAGAGGTCACTCTCAAAGGTGTTACCCCAATATATGGCCGAGGGAACACTGTCCGAGGTCACGAGGAGGATTCTGCTCTTAAGATCCCTCCCAGGCCCCAAGCAAGGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTACAGTCCCTGTGGAAGAGATGATTCGGCGTATCGGGAGTAGAATTGATCATAGTCGTGATTTTGTTCAGCCACATGAAGGGGAGGGTGCCCGTGAAACTGCAGAGAGAACTACTTCCTTGCTAAGTAGGTTCTTGACTGCTCGAGGGATTCGGAGAGAGCAGAATTTAGGACCACTCCCTGAGGATGTGATGGCTTTTGCTCAGAATAATGCTACTAATAATACTGCTGAGGCAGGGGATAACCGAAATAGGGTGCAACAATCTCATATGCTTCGAAGAACACAATCACATAGAGCAACGCTTTCTACTATTTCAGCATTCACTTCTGCTGAAAGGTTACTGGAGGCTTATTTCCGTAGCAGTGCAATTGTTAGGAACCAAGAACAACCTTCACCTCCAGTTGATGACAGGGATTCTTTTTCAAGCATTGGCGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTGGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGATTGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCGAGACGCAGACGTTTGAACTGA 1335 0.4846 MEEESSDAMNLDLNLGPGPEPETGPISNEAVNLDEWIGEPLQRISEAVRFRARQRWRWRHVPLPHPELHVHIPPEAARHFHIPPEAHNISMELNQFLVNSGNGTALQAGEGSVAAEERVEEVPKACENVNGVAEDEALQKKDDVEKGSGTDGDFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHLHSDARECPVCKGEVTLKGVTPIYGRGNTVRGHEEDSALKIPPRPQARRVESLRQTIQRNAFTVPVEEMIRRIGSRIDHSRDFVQPHEGEGARETAERTTSLLSRFLTARGIRREQNLGPLPEDVMAFAQNNATNNTAEAGDNRNRVQQSHMLRRTQSHRATLSTISAFTSAERLLEAYFRSSAIVRNQEQPSPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRLSDVDSGDSRAPRRRRLN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2421g00025 444 FunFam E3 ubiquitin-protein ligase RMA3 125 246 - -
Vium2421g00025 444 MobiDBLite consensus disorder prediction 422 444 - -
Vium2421g00025 444 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Vium2421g00025 444 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 128 342 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vium2421g00025 444 SUPERFAMILY RING/U-box 152 211 - -
Vium2421g00025 444 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Vium2421g00025 444 MobiDBLite consensus disorder prediction 1 23 - -
Vium2421g00025 444 CDD RING-HC_AtRMA-like 155 198 - -
Vium2421g00025 444 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Vium2421g00025 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 253 IPR013083 -
Vium2421g00025 444 SMART ring_2 157 197 IPR001841 -
Vium2421g00025 444 MobiDBLite consensus disorder prediction 411 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2421g00025 Vium-Chr2421 135926 138235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2421g00025 1 435 C3H Transcription Factor Family AT3G58030 52.125 6.81e-136 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2421g00025 K10666 - gmx:100811099 736.102