Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2421g00009 ATGCCGGTGCCTCCGTGGCTTTCATGTATAGTTACTTCTTGCATAAAGCCTTTTAAGCCTCATGCCATCGTGAGCAGTGATGATGATGATGATGATGAGCTTCTATGGTGTAAAGATATTCGGAGACATTCTCGTGGTGAATTTTCCTTTGCTGCATGTCAGGCCAATCAGGAAATTGAAGATCATAGCCAAGTTGAGATTGGCTCTAATGCGTTATTTGTTGGGGTTTATGATGGTCACGGTGGTGATGATTGTTCCCGTTTTATTAAAGCTCGTCTCTTCAACAATTTAATGAACGTTGCTAGGAATCAGGGAACTATAGACGAAGAAACTTTGAGGGAAGCTTTTGCTATGACAGAGGATGGTTTTATGTTACTTGTTCAGAGGGGTTATGAGTTACAGAACAATTTGGCAACTGTAGGTTCCTGTTGTCTGGTTGGTGTTATCTGGGAAGGAGTCCTATATATCTCCAATCTTGGAGACTCTCGTGCCATTGTTGGAACTTTAAGTACATGTAGAAGCATCACTACTCAACAGTTGACAACAGAACATAATTGCATCAGGGAGGAAATTAGACAAGAACTTAGGGCTAAGCATCCCAATGATCCAGATATTGTAGTCTTAGAACGTGGAGCATGGCGTGTTAAAGGCATCATCCAGGTATCCAGAACCATAGGAGATGCGTATCTGAAGAATCCAACTTATATGAAGCCACCTCTCACTGTACCTGTGCTGTCTGCAGAACCAACTCTAAATACACGAGTTTTGACATCCGATGACAAATTTCTTATATTTGCATCGGATGGACTTTGGGAACACTTGACAAATCAGCAAGCAGCTGAGATTGTTCACTTGAATCCTCGAAGAGGGATTGCAAGAAGACTTATTAAGGCTGCTGTACAGTCGGCAGCTAAAAGAGCGAATATGGAATATAGAGCGCTTCGGAACTTGCAGAGAGGGAGCAGACGGGTTTATCATGATGACATTACTGTGGTTGTTGTCTTCCTCGACGGTCCCTCACGTTTCACTGTGCAACAGTTGTCCCTAAGAGCGTTCGAAGACGAAGCTGGAGTATCAGAATTTCAAAGTCTACACGGTTTGACGTGA 1107 0.43 MPVPPWLSCIVTSCIKPFKPHAIVSSDDDDDDELLWCKDIRRHSRGEFSFAACQANQEIEDHSQVEIGSNALFVGVYDGHGGDDCSRFIKARLFNNLMNVARNQGTIDEETLREAFAMTEDGFMLLVQRGYELQNNLATVGSCCLVGVIWEGVLYISNLGDSRAIVGTLSTCRSITTQQLTTEHNCIREEIRQELRAKHPNDPDIVVLERGAWRVKGIIQVSRTIGDAYLKNPTYMKPPLTVPVLSAEPTLNTRVLTSDDKFLIFASDGLWEHLTNQQAAEIVHLNPRRGIARRLIKAAVQSAAKRANMEYRALRNLQRGSRRVYHDDITVVVVFLDGPSRFTVQQLSLRAFEDEAGVSEFQSLHGLT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2421g00009 368 PANTHER PROTEIN PHOSPHATASE 45 334 IPR015655 GO:0004722|GO:0006470
Vium2421g00009 368 CDD PP2Cc 54 336 IPR001932 -
Vium2421g00009 368 Gene3D - 33 341 IPR036457 -
Vium2421g00009 368 SMART PP2C_4 41 334 IPR001932 -
Vium2421g00009 368 Pfam Protein phosphatase 2C 69 304 IPR001932 -
Vium2421g00009 368 SUPERFAMILY PP2C-like 56 339 IPR036457 -
Vium2421g00009 368 ProSitePatterns PPM-type phosphatase domain signature. 73 81 IPR000222 GO:0043169
Vium2421g00009 368 ProSiteProfiles PPM-type phosphatase domain profile. 47 336 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2421g00009 Vium-Chr2421 31833 33984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2421g00009 6 361 PP2C-type Phosphatase Gene Family AT5G06750 50.130 1.38e-131 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2421g00009 K01102 - gmx:100806476 429.483