Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2421g00007 ATGGGAATAGAGCGCGTGCAGTGTGACTATGTCTCTCTGGACGAAACCTTCGAAATTGGAAAAGAGAAGTATCACGGTCAACAGTACTGCCATATTTACTTCGCACGCCTTCATTTGATGCGGACTCTCTTGTATTCACTCGTTCCTCACTGGAAACCTAATTTTCCCGTGTGCACGGTGTTGGAATTGGAAGAGGGCAAGGAATGTGTCATTGTTGGAACCCTCTACAAACACATGCAGCTCAAACCTCGCGTACTTGATGAGTATTCTAAGCAGAAATCAGTGGTTCCACTTGTCAAGCCACATAACTTCATGCACTCTGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAGCGGAAATATCATTCCGCCTGAATATGTAACAGGAATTGTGGTCGCTGTACTTGGAAAGGAAAGTGGGGCAGGTGACTTTTTGGTTCAGGATGTACTAGATGCTGGCTTACCCCCACAGATAGAATTCCCCCTTAAATCAGGGGAAGACAAATACGTTGTTCTTGTGTCAGGTTTAAGTGTTGGTAGCAGCACCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACGGGGCATTTAGGGGATGAGAAGGCACAACTTTTTGCATCAAAAATTGTTCAAGTTGTCTTTGCTGGGAATTTAGTTGAGATACCTCACAGAATTCTTAATGGACAGAATTTGGCTTCAGAAGATTTTGCAAGAATGTCTGAGCCAATAAGGGAGCTAGACATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATTATGCCAGGACCCAGTGACCCTGCGAATTTCTCATTGCCACAACAGTCATTGCATGAATGCCTTTTCCCTGGGTCGTCATCGTATAATACTTTCAGATCCTGTACAAATCCTCATTCTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCCGGTCAAAATGTAGATGATCTTGACAAATATTCAGATGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTAGCACCCACCGCACCTAATACTCTTGGATCAGAAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGGTGAGCTTCAAATCGTGCACACTTCATTTTAACTTAGATATGGCCTTTTTATACTTGTATAAATACATTATTCCATTAGCATATCAGTAA 1227 0.4205 MGIERVQCDYVSLDETFEIGKEKYHGQQYCHIYFARLHLMRTLLYSLVPHWKPNFPVCTVLELEEGKECVIVGTLYKHMQLKPRVLDEYSKQKSVVPLVKPHNFMHSDDYLVLEDESGRVKLSGNIIPPEYVTGIVVAVLGKESGAGDFLVQDVLDAGLPPQIEFPLKSGEDKYVVLVSGLSVGSSTSNPLQFQLLIDHITGHLGDEKAQLFASKIVQVVFAGNLVEIPHRILNGQNLASEDFARMSEPIRELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHECLFPGSSSYNTFRSCTNPHSFELDNVRFLGTSGQNVDDLDKYSDAKDKLEFMERTLRWRHLAPTAPNTLGSEGQLVRLICVPKFSETGVAVMVSFKSCTLHFNLDMAFLYLYKYIIPLAYQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2421g00007 408 Gene3D - 166 359 - -
Vium2421g00007 408 FunFam DNA polymerase delta subunit 2 34 157 - -
Vium2421g00007 408 Pfam DNA polymerase delta subunit OB-fold domain 28 154 IPR040663 -
Vium2421g00007 408 Pfam DNA polymerase alpha/epsilon subunit B 175 358 IPR007185 GO:0003677|GO:0006260
Vium2421g00007 408 Gene3D - 35 157 - -
Vium2421g00007 408 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 358 IPR024826 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2421g00007 Vium-Chr2421 11827 16333 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2421g00007 4 388 Core DNA Replication Machinery Family AT2G42120 66.190 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2421g00007 K02328 - gmx:100780072 662.144