Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2421g00006 ATGGGAATAGAGCGCGTGCAGTGTGACTATGTCTCTCTGGACGAAACCTTCGAAATTGGAAAAGAGAAGTATCACGGTCAACAGTACTGCCATATTTACTTCGCACGCCTTCATTTGATGCGGACTCTCTTGTATTCACTCGTTCCTCACTGGAAACCTAATTTTCCCGTGTGCACGGTGTTGGAATTGGAAGAGGGCAAGGAATGTGTCATTGTTGGAACCCTCTACAAACACATGCAGCTCAAACCTCGCGTACTTGATGAGTATTCTAAGCAGAAATCAGTGGTTCCACTTGTCAAGCCACATAACTTCATGCACTCTGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAGCGGAAATATCATTCCGCCTGAATATGTAACAGGAATTGTGGTCGCTGTACTTGGAAAGGAAAGTGGGGCAGGTGACTTTTTGGTTCAGGATGTACTAGATGCTGGCTTACCCCCACAGATAGAATTCCCCCTTAAATCAGGGGAAGACAAATACGTTGTTCTTGTGTCAGGTTTAAGTGTTGGTAGCAGCACCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACGGGGCATTTAGGGGATGAGAAGGCACAACTTTTTGCATCAAAAATTGTTCAAGTTGTCTTTGCTGGGAATTTAGTTGAGATACCTCACAGAATTCTTAATGGACAGAATTTGGCTTCAGAAGATTTTGCAAGAATGTCTGAGCCAATAAGGGAGCTAGACATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATTATGCCAGGACCCAGTGACCCTGCGAATTTCTCATTGCCACAACAGTCATTGCATGAATGCCTTTTCCCTGGGTCGTCATCGTATAATACTTTCAGATCCTGTACAAATCCTCATTCTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCCGGTCAAAATGTAGATGATCTTGACAAATATTCAGATGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTAGCACCCACCGCACCTAATACTCTTGGGTGCTTTCCTTTTACTGAGAGAGATCCTTTCTTCATTGAGAGTTGTCCTCACGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGTATCATAAAGGGATCAGAAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGGTGAGCTTCAAATCGTGCACACTTCATTTTAACTTAGATATGGCCTTTTTATACTTGTATAAATACATTATTCCATTAGCATATCAGTAA 1329 0.4161 MGIERVQCDYVSLDETFEIGKEKYHGQQYCHIYFARLHLMRTLLYSLVPHWKPNFPVCTVLELEEGKECVIVGTLYKHMQLKPRVLDEYSKQKSVVPLVKPHNFMHSDDYLVLEDESGRVKLSGNIIPPEYVTGIVVAVLGKESGAGDFLVQDVLDAGLPPQIEFPLKSGEDKYVVLVSGLSVGSSTSNPLQFQLLIDHITGHLGDEKAQLFASKIVQVVFAGNLVEIPHRILNGQNLASEDFARMSEPIRELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHECLFPGSSSYNTFRSCTNPHSFELDNVRFLGTSGQNVDDLDKYSDAKDKLEFMERTLRWRHLAPTAPNTLGCFPFTERDPFFIESCPHVYFVGNQDKFETRIIKGSEGQLVRLICVPKFSETGVAVMVSFKSCTLHFNLDMAFLYLYKYIIPLAYQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2421g00006 442 CDD MPP_PolD2_C 174 414 IPR041863 -
Vium2421g00006 442 Gene3D - 166 427 - -
Vium2421g00006 442 Gene3D - 35 157 - -
Vium2421g00006 442 FunFam DNA polymerase delta subunit 2 34 157 - -
Vium2421g00006 442 Pfam DNA polymerase alpha/epsilon subunit B 175 385 IPR007185 GO:0003677|GO:0006260
Vium2421g00006 442 Pfam DNA polymerase delta subunit OB-fold domain 28 154 IPR040663 -
Vium2421g00006 442 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 422 IPR024826 -
Vium2421g00006 442 FunFam DNA polymerase delta small subunit 160 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2421g00006 Vium-Chr2421 11827 16333 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2421g00006 4 422 Core DNA Replication Machinery Family AT2G42120 72.381 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2421g00006 K02328 - gmx:100780072 749.199