Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2421g00004 ATGGGAATAGAGCGCGTGCAGTGTGACTATGTCTCTCTGGACGAAACCTTCGAAATTGGAAAAGAGAAGTATCACGGTCAACAGTACTGCCATATTTACTTCGCACGCCTTCATTTGATGCGGACTCTCTTGTATTCACTCGTTCCTCACTGGAAACCTAATTTTCCCGTGTGCACGGTGTTGGAATTGGAAGAGGGCAAGGAATGTGTCATTGTTGGAACCCTCTACAAACACATGCAGCTCAAACCTCGCGTACTTGATGAGTATTCTAAGCAGAAATCAGTGGTTCCACTTGTCAAGCCACATAACTTCATGCACTCTGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAGCGGAAATATCATTCCGCCTGAATATGTAACAGGAATTGTGGTCGCTGTACTTGGAAAGGAAAGTGGGGCAGGTGACTTTTTGGTTCAGGATGTACTAGATGCTGGCTTACCCCCACAGATAGAATTCCCCCTTAAATCAGGGGAAGACAAATACGTTGTTCTTGTGTCAGGTTTAAGTGTTGGTAGCAGCACCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACGGGGCATTTAGGGGATGAGAAGGCACAACTTTTTGCATCAAAAATTGTTCAAGTTGTCTTTGCTGGGAATTTAGTTGAGATACCTCACAGAATTCTTAATGGACAGAATTTGGCTTCAGAAGATTTTGCAAGAATGTCTGAGCCAATAAGGGAGCTAGACATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATTATGCCAGGACCCAGTGACCCTGCGAATTTCTCATTGCCACAACAGTCATTGCATGAATGCCTTTTCCCTGGGTCGTCATCGTATAATACTTTCAGATCCTGTACAAATCCTCATTCTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCCGGTCAAAATGTAGATGATCTTGACAAATATTCAGATGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTAGCACCCACCGCACCTAATACTCTTGGATCAGAAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGCTTAATCTAAGGGACCTCGAATGTCATGCTCTCAGTTTTACCCTTGATCTATAA 1191 0.4282 MGIERVQCDYVSLDETFEIGKEKYHGQQYCHIYFARLHLMRTLLYSLVPHWKPNFPVCTVLELEEGKECVIVGTLYKHMQLKPRVLDEYSKQKSVVPLVKPHNFMHSDDYLVLEDESGRVKLSGNIIPPEYVTGIVVAVLGKESGAGDFLVQDVLDAGLPPQIEFPLKSGEDKYVVLVSGLSVGSSTSNPLQFQLLIDHITGHLGDEKAQLFASKIVQVVFAGNLVEIPHRILNGQNLASEDFARMSEPIRELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHECLFPGSSSYNTFRSCTNPHSFELDNVRFLGTSGQNVDDLDKYSDAKDKLEFMERTLRWRHLAPTAPNTLGSEGQLVRLICVPKFSETGVAVMLNLRDLECHALSFTLDL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2421g00004 396 Pfam DNA polymerase delta subunit OB-fold domain 28 154 IPR040663 -
Vium2421g00004 396 FunFam DNA polymerase delta subunit 2 34 157 - -
Vium2421g00004 396 Gene3D - 35 157 - -
Vium2421g00004 396 CDD MPP_PolD2_C 174 392 IPR041863 -
Vium2421g00004 396 Gene3D - 166 358 - -
Vium2421g00004 396 Gene3D - 359 395 - -
Vium2421g00004 396 Pfam DNA polymerase alpha/epsilon subunit B 175 358 IPR007185 GO:0003677|GO:0006260
Vium2421g00004 396 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 358 IPR024826 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2421g00004 Vium-Chr2421 11827 17936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2421g00004 4 396 Core DNA Replication Machinery Family AT2G42120 66.822 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2421g00004 K02328 - gmx:100780072 684.1