Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2421g00003 ATGGGAATAGAGCGCGTGCAGTGTGACTATGTCTCTCTGGACGAAACCTTCGAAATTGGAAAAGAGAAGTATCACGGTCAACAGTACTGCCATATTTACTTCGCACGCCTTCATTTGATGCGGACTCTCTTGTATTCACTCGTTCCTCACTGGAAACCTAATTTTCCCGTGTGCACGGTGTTGGAATTGGAAGAGGGCAAGGAATGTGTCATTGTTGGAACCCTCTACAAACACATGCAGCTCAAACCTCGCGTACTTGATGAGTATTCTAAGCAGAAATCAGTGGTTCCACTTGTCAAGCCACATAACTTCATGCACTCTGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAGCGGAAATATCATTCCGCCTGAATATGTAACAGGAATTGTGGTCGCTGTACTTGGAAAGGAAAGTGGGGCAGGTGACTTTTTGGTTCAGGATGTACTAGATGCTGGCTTACCCCCACAGATAGAATTCCCCCTTAAATCAGGGGAAGACAAATACGTTGTTCTTGTGTCAGGTTTAAGTGTTGGTAGCAGCACCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACGGGGCATTTAGGGGATGAGAAGGCACAACTTTTTGCATCAAAAATTGTTCAAGTTGTCTTTGCTGGGAATTTAGTTGAGATACCTCACAGAATTCTTAATGGACAGAATTTGGCTTCAGAAGATTTTGCAAGAATGTCTGAGCCAATAAGGGAGCTAGACATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATTATGCCAGGACCCAGTGACCCTGCGAATTTCTCATTGCCACAACAGTCATTGCATGAATGCCTTTTCCCTGGGTCGTCATCGTATAATACTTTCAGATCCTGTACAAATCCTCATTCTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCCGGTCAAAATGTAGATGATCTTGACAAATATTCAGATGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTAGCACCCACCGCACCTAATACTCTTGGGTGCTTTCCTTTTACTGAGAGAGATCCTTTCTTCATTGAGAGTTGTCCTCACGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGTATCATAAAGGGATCAGAAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGCTTAATCTAAGGGACCTCGAATGTCATGCTCTCAGTTTTACCCTTGATCTATAA 1293 0.423 MGIERVQCDYVSLDETFEIGKEKYHGQQYCHIYFARLHLMRTLLYSLVPHWKPNFPVCTVLELEEGKECVIVGTLYKHMQLKPRVLDEYSKQKSVVPLVKPHNFMHSDDYLVLEDESGRVKLSGNIIPPEYVTGIVVAVLGKESGAGDFLVQDVLDAGLPPQIEFPLKSGEDKYVVLVSGLSVGSSTSNPLQFQLLIDHITGHLGDEKAQLFASKIVQVVFAGNLVEIPHRILNGQNLASEDFARMSEPIRELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHECLFPGSSSYNTFRSCTNPHSFELDNVRFLGTSGQNVDDLDKYSDAKDKLEFMERTLRWRHLAPTAPNTLGCFPFTERDPFFIESCPHVYFVGNQDKFETRIIKGSEGQLVRLICVPKFSETGVAVMLNLRDLECHALSFTLDL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2421g00003 430 CDD MPP_PolD2_C 174 426 IPR041863 -
Vium2421g00003 430 FunFam DNA polymerase delta subunit 2 34 157 - -
Vium2421g00003 430 Gene3D - 166 429 - -
Vium2421g00003 430 Pfam DNA polymerase alpha/epsilon subunit B 175 385 IPR007185 GO:0003677|GO:0006260
Vium2421g00003 430 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 426 IPR024826 -
Vium2421g00003 430 Pfam DNA polymerase delta subunit OB-fold domain 28 154 IPR040663 -
Vium2421g00003 430 Gene3D - 35 157 - -
Vium2421g00003 430 FunFam DNA polymerase delta small subunit 160 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2421g00003 Vium-Chr2421 11827 17936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2421g00003 4 430 Core DNA Replication Machinery Family AT2G42120 72.897 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2421g00003 K02328 - gmx:100780072 771.155