Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2418g00003 ATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCCAGTTCTCAGATGGGATATCAGATTCAGGCCAACTCTGCAACCATGAATGCTTACAATGGCTTAAAGAAAAAAGAAGTTGAAATGCCCTGTACTGAAAACTCTGAGCAACTAGAGAATTATTCTGATTCAACGGATAGCAAACAAGAGACCCTATATAATCGGCAGGAAAATGAGTCAAAAGTAAATTCCAAAACAGTGGAAAATAATACAGAGAGTAGCAGTACAGATCAAGATAAAATCTTCAAGAAACCAGACAAAATTCTGCATTGTCCTCGATGCAACAGTTTAGACACCAAATTCTGTTATTTCAATAACTACAATGTGAACCAACCTCGGTATTTCTGCAAGAACTGCCAAAGGTACTGGACTGCAGGTGGAACCATGAGAAATGTTCCAGTGGGTGCGGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATACCGGCACATTATTGTATCTTGTGACGGAATTCCAACTACAAGTGACTCTTCTTGTCACCAACTTGCCACAACACTTCAATCTGCTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTGTTGAAATTTTGTCCGGATGCCCCTCCTCTTTGTGAATCCATGGAGTCAATGCTTAATCTTAAAGAACAAAATCGAAGTGCTGATGAAAATACTGTCAATTATGCAGAAAAAGGGGAGGAGGAAGTATCCTTATGTGGATCATCATCTATGACCAATGCTTACACTCCAAGAAACAAATCAACTGAACCAACTGCATCAAAACCTATGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCCAGATTGGAACAATGTTGCTTCCACTGCATCACTTCACCCCTCTTCACTACAAATGTGTAACCCTTATAACAGTGCCGACCCTGCTTCAATGCAGTGGTGTCCTACACCGATCATGGCAGTTCCAACAATTTGCCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGAGTGGACCACCTGTGTATGGTGGTGGAACAGGAGCTGCTTCAATGGGTTTCAATGCCTGCCTTTCACCTACTTCCTCTACCAGTAATAGCTGCTGCTCAGGCAACGGCTCCCCAACACTTGGCAAACACACAAGAGACAATCTTTCAACAGATGAAGAAAAATCAGACATGTGTATCTTGGCCTCATCAGGAACCAACCCTGAATGTGTACCAGAAGGTACTATTTCAAAAAGGGCAAAGCCTAGAGAAGGCAAAGACCGTGTTTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTTCAAGAGGGCATGTGA 1395 0.4323 MSNKDPGIRLFGRKIPLPESQIPASSQMGYQIQANSATMNAYNGLKKKEVEMPCTENSEQLENYSDSTDSKQETLYNRQENESKVNSKTVENNTESSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVSCDGIPTTSDSSCHQLATTLQSAAVFRSSTDNGTVLKFCPDAPPLCESMESMLNLKEQNRSADENTVNYAEKGEEEVSLCGSSSMTNAYTPRNKSTEPTASKPMQCYPVPPWIFPWNPDWNNVASTASLHPSSLQMCNPYNSADPASMQWCPTPIMAVPTICPPSFPLQFVPGSYWSGPPVYGGGTGAASMGFNACLSPTSSTSNSCCSGNGSPTLGKHTRDNLSTDEEKSDMCILASSGTNPECVPEGTISKRAKPREGKDRVLGVSQILEANPAAISRAHAFQEGM 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2418g00003 464 MobiDBLite consensus disorder prediction 384 406 - -
Vium2418g00003 464 Pfam Dof domain, zinc finger 109 166 IPR003851 GO:0003677|GO:0006355
Vium2418g00003 464 PANTHER CYCLIC DOF FACTOR 2 3 463 IPR045174 GO:0003700|GO:0006355
Vium2418g00003 464 MobiDBLite consensus disorder prediction 79 99 - -
Vium2418g00003 464 ProSitePatterns Zinc finger Dof-type signature. 114 150 IPR003851 GO:0003677|GO:0006355
Vium2418g00003 464 ProSiteProfiles Zinc finger Dof-type profile. 112 166 IPR003851 GO:0003677|GO:0006355
Vium2418g00003 464 MobiDBLite consensus disorder prediction 56 72 - -
Vium2418g00003 464 MobiDBLite consensus disorder prediction 56 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2418g00003 Vium-Chr2418 16682 19717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2418g00003 5 462 C2C2-Dof Transcription Factor Family AT5G39660 30.957 1.93e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium2418g00003 zf-Dof 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2418g00003 - - pvu:PHAVU_004G054000g 725.317