Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2413g00001 ATGGGTTACCTCTCTTGCAATGCCCAATCCGCAATCGCCACCTGCGACCCTCACTTTAAGAAGCACAAACCCCTCCCTGCCAAACCAATCCGCCACTTCAACTACGCCGAAATCTCCGCCGCCGCTTCTGGCTTCTCCGCCGATACCTTTCTGGGCAGAGGCAGCCATGGCAGAGTCTACAAAGCTACCCTCGACGGCGGAAAGCTCCTTGCCGCCGTCAAAACAACGAAACTGGTCTCTGCTTCGAAGAACCACTCCACTAAATGCACCGGCTGCGGCAACTGCACCAGTCCAGTGGAGAACGAAATCGAGATCCTCTCTCAAGTTCCGAGCCCCCGCGTGGTGAACCTCATCGGCTTCAGCACCGACCCAAACGGTAACAAATTAATCGTCGTTGAATACATGCCCAACGGTTCGCTCCACGATCTATTACATTCCGTTAGAAAACCTCTCGGTTGGAACCGGAGGGTCCGGTTCGCGGTTCAGGTTGCGAAAGCGGTTCGCGAATTGCACTCTTCCAACCCTCCCGTTATTCACCGCGACGTTAAGTCTTCCAATGTTTTAATCGACGAGAGATGGAACGCGAGGCTCGGTGACTTTGGCCTTGCGTTAAGGGGACACGTGGAGGACGTTCGCGTCAAGTGCACGCCGCCCGCGGGGACGTTAGGGTACCTCGACCCGTGCTATCTGGCGCCGGAGGATCTCAGCGCCAAGAGCGACGTCTTCAGCTTCGGGATCTTGCTGCTGGAGATAATCAGCGGCCGGAACGCCATCGACGTCAATTATAGCCCTCCCTCTATTGTGGACTGGGCGGTGCCGCTGATCAAGCTCGGCGACTTCGCCGGAATCTGTGACCGCCGGATCGGAACGCCGACGGACCCCGCCGTGGTGCGGCAGCTCGCGGTGCTAGCTGCCAGATGCGTGAGATCGAAGGCCGAGAAGCGGCCGTCCATGGCGGAGGTTGTGGAGTGTCTGAATCTGGCAAGGAAGAGGATTCGTGCGTCCCCGGTGTTAATGTCTCTGCGGCGGCGCGTGGCGCGTATGGAGAGCGCGGTGCCGGTGGTGGCGTGGGAGGAGTGTGATGATAATAGTATTAATGACTGTGATAGGAGTGAGAAATTTGTGAGCATGGTGAAAGGTGGGAGTGGGAGCAGAAGGAAGGGGAAAGTATCCAGTGTGTGGGTTGTAGGGTATGGGAGTGAAGCGTCCAATAATAATAAAGTGATAAGGTCAAAGTCCATTGGTTCTTCTTCTGGTTCGGTCAAAGGGAGCTGGGTTAAAATGCAGCCACAGCCAACCGAGCAGGGATTTGGGAGGAGGAAGGTGAGGTTAAAAAAGTCAAAATCTTTGGGGGTTTTGCAAGGTTCTGTACTTTCACATTACAGTGAGAATAATAACAGTTATTATAGTTATAATAATAATAAGAAGAAGAAGAATAATGGCGATGATGTATCAGTAGTAATTGGGTGTGCAATGGCGAAGTTGGTTGTTACAGATAATTCAGAAAAGAAAATGGTGGAAAAGCCGTTAGTGAAATTGCATGATGAGAGTGGGAATGTGATTTGA 1566 0.53 MGYLSCNAQSAIATCDPHFKKHKPLPAKPIRHFNYAEISAAASGFSADTFLGRGSHGRVYKATLDGGKLLAAVKTTKLVSASKNHSTKCTGCGNCTSPVENEIEILSQVPSPRVVNLIGFSTDPNGNKLIVVEYMPNGSLHDLLHSVRKPLGWNRRVRFAVQVAKAVRELHSSNPPVIHRDVKSSNVLIDERWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSIVDWAVPLIKLGDFAGICDRRIGTPTDPAVVRQLAVLAARCVRSKAEKRPSMAEVVECLNLARKRIRASPVLMSLRRRVARMESAVPVVAWEECDDNSINDCDRSEKFVSMVKGGSGSRRKGKVSSVWVVGYGSEASNNNKVIRSKSIGSSSGSVKGSWVKMQPQPTEQGFGRRKVRLKKSKSLGVLQGSVLSHYSENNNSYYSYNNNKKKKNNGDDVSVVIGCAMAKLVVTDNSEKKMVEKPLVKLHDESGNVI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2413g00001 521 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Vium2413g00001 521 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Vium2413g00001 521 PANTHER OS01G0253100 PROTEIN 24 328 - -
Vium2413g00001 521 SMART serkin_6 45 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2413g00001 521 FunFam Serine/threonine-protein kinase-like protein 135 338 - -
Vium2413g00001 521 SUPERFAMILY Protein kinase-like (PK-like) 26 325 IPR011009 -
Vium2413g00001 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Vium2413g00001 521 Pfam Protein tyrosine and serine/threonine kinase 49 325 IPR001245 GO:0004672|GO:0006468
Vium2413g00001 521 ProSiteProfiles Protein kinase domain profile. 45 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2413g00001 521 MobiDBLite consensus disorder prediction 420 439 - -
Vium2413g00001 521 FunFam Serine/threonine-protein kinase-like protein 8 134 - -
Vium2413g00001 521 Gene3D Transferase(Phosphotransferase) domain 1 135 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2413g00001 Vium-Chr2413 8723 10796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2413g00001 31 336 Receptor kinase-like Gene Family AT3G59420 40.514 1.56e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium2413g00001 PK_Tyr_Ser-Thr 1.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2413g00001 - - gmx:100799382 741.11