LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2408g00008	ATGGCTCCGCCGCCTCCGGTGGAACATAACAACGCCGACTCCTCCACAACCGCCTCTGTCGCCGCAGACTCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTTTCAACTTGTCGACGACCAATCCATCGATGATGTTATCTCCTGGAACGAGGACGGATCAACGTTCATCGTGTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTTAAACACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACTTACGGATTCAGGAAGGTTGTACCTGATCGGTGGGAATTTTCGAACGAGTGTTTCCGTCGAGGCGAGAAGCAGCTTTTGAGCGAAATTCAACGGCGGAAGATCTCGTTGCCGGTGACTTCGACGTCGCCGTCTACGACGGCTCCGGCGACGGTTTCTGTTCCGTCGTCGATGCCGTTGACTGCGATTCCGATCATATCGCCGTCGAACTCCGGCGAGGAGCAGGTGATATCGTCGAACTCGTCACCGTCGCTCGCGCCGGCGGAGCTCGTTGACGAGAACGAGAGGCTTAGAAAAGAGAACGTTCAGTTGACGAAAGAGCTCGCGGAGATGAGATCGCTCTGCAATAATATCTATGCTCTCATGTCGAATTACGCGAACACCAACGGTAACGGTAACGTAAGTTACCAAACGGACGGCGGTGCTGGTGGCGCGCAGGGAAGTAGGGAGTCAGGCATGACGGCGGTGAAGCCGCTGGATTTGATGCCGACGAACCGGATCTCCGGTGAGGAAGCGGCGGAGTTGAATCCGAAGCTGTTCGGTGTGGCGATTGGAGCGAAGCGCGCGAGGGAGGGAGGAGGAAGCGGTGGAGAAGAAGGAGGTGGAGCAAAGAAAGATACAATGCTGCGTCTGCACCACCAGGGTCCTGGGGACGTGAAAGCTGAACCGTTGGATTGCCAAAACCACCGCGAGAATCAGGAAGCGCCGTGGTTGAGTCAGTGTCATATAGCAAATCAGAGGGTTTGTAATTGA	1017	0.5477	MAPPPPVEHNNADSSTTASVAADSQRSIPTPFLTKTFQLVDDQSIDDVISWNEDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKQLLSEIQRRKISLPVTSTSPSTTAPATVSVPSSMPLTAIPIISPSNSGEEQVISSNSSPSLAPAELVDENERLRKENVQLTKELAEMRSLCNNIYALMSNYANTNGNGNVSYQTDGGAGGAQGSRESGMTAVKPLDLMPTNRISGEEAAELNPKLFGVAIGAKRAREGGGSGGEEGGGAKKDTMLRLHHQGPGDVKAEPLDCQNHRENQEAPWLSQCHIANQRVCN	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2408g00008	338	ProSitePatterns	HSF-type DNA-binding domain signature.	71	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2408g00008	338	PRINTS	Heat shock factor (HSF) domain signature	70	82	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2408g00008	338	PRINTS	Heat shock factor (HSF) domain signature	32	55	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2408g00008	338	PRINTS	Heat shock factor (HSF) domain signature	83	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2408g00008	338	SUPERFAMILY	"Winged helix" DNA-binding domain	29	121	IPR036390	-
	Vium2408g00008	338	Gene3D	-	24	122	IPR036388	-
	Vium2408g00008	338	MobiDBLite	consensus disorder prediction	9	25	-	-
	Vium2408g00008	338	Coils	Coil	182	202	-	-
	Vium2408g00008	338	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	24	217	IPR027725	-
	Vium2408g00008	338	FunFam	Heat stress transcription factor B-4	24	122	-	-
	Vium2408g00008	338	SMART	hsfneu3	28	121	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2408g00008	338	MobiDBLite	consensus disorder prediction	1	25	-	-
	Vium2408g00008	338	Pfam	HSF-type DNA-binding	32	121	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2408g00008	Vium-Chr2408	110450	112165	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2408g00008	22	338	HSF	AT5G62020	47.761	9.02e-96	284

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vium2408g00008		HSF_DNA-bind	3.2e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2408g00008	K09419		-	gmx:100812267	516.924