Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2405g00002 ATGGAATCAAATCCCACCCATGACGGGGATGACACCTCGGAGAAGCTGTCACCGCCAATGGTGGACCAGCCGGAGTCGTCGTCACCCTCTCCGTCTTCCCCGCAGGCGCTACAAATGAAAGAAGAGGCCATGGACGCGGAGCAAGGCGTTGACATGTCCCTTCCCGTGAACGTTATTCCGATGCCTCTGACGGTGGCGAAGAGGCCCTCGAAGGACCGACACACGAAGGTGGAGGGGCGTGGCCGCAGAATCCGGATGCCGGCTACATGCGCCGCCAGGATCTTCCAGCTGACGCGCGAGCTGGGGCACAAGTCGGACGGAGAAACAATCCGATGGCTTCTGGAGCACGCTGAGCCCGCTATCATCGAGGCCACCGGAACCGGCACCGTTCCGGCGATCGCGGTGTCTGTCGGCGGTACTCTGAAGATTCCGACATCCTCGGCGGCGAGGCCCGACGGGGAAGACAACCCAAAGAAACGAAGGAGGAGAGCGTCAAACAGCGAATTCATCGACGTGAACGAAAACCACGTTTCGGTGTCTTCAGGACTCGCACCAATCGCTCAAACCGCATATGGCGGTGTTGCCAGTGGCGGTGGTGGTGGAGTAGTTCCACTTTGGAACGGTAACGGTTCAGGGCCTTTCTTCATGTTCCCAAACGCTTCAAACCCGCCTCAGTATTGGGCCATTCCCGCAACGGCGGCCCCATTTTTTAACGTACAGGCCCGGCCCATTTCGGGGTTTGTTTCTGCCTTACAGATGCACGAACAGGATAAGCACTCCTCAAATGGTGGTGCCTCGGATTCTGTGAACTCTTCGTCCACTGTGGGTTCTAGTATGAGCTCAGTGAGTGTTACTACCAGCGCCGCCGCTTCCTCCTCTTCCGCCGCCACAACCACTCAAATACTCAGGGATTTCTCTTTGGAAATTTATGACAAGAAAGAACTTCAATTTTTGGGTCAAGCGCCACCTTCTTCAAAGCCTTGA 984 0.5671 MESNPTHDGDDTSEKLSPPMVDQPESSSPSPSSPQALQMKEEAMDAEQGVDMSLPVNVIPMPLTVAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVSVGGTLKIPTSSAARPDGEDNPKKRRRRASNSEFIDVNENHVSVSSGLAPIAQTAYGGVASGGGGGVVPLWNGNGSGPFFMFPNASNPPQYWAIPATAAPFFNVQARPISGFVSALQMHEQDKHSSNGGASDSVNSSSTVGSSMSSVSVTTSAAASSSSAATTTQILRDFSLEIYDKKELQFLGQAPPSSKP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2405g00002 327 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 310 IPR005333 GO:0003700
Vium2405g00002 327 MobiDBLite consensus disorder prediction 253 276 - -
Vium2405g00002 327 MobiDBLite consensus disorder prediction 1 47 - -
Vium2405g00002 327 MobiDBLite consensus disorder prediction 1 15 - -
Vium2405g00002 327 MobiDBLite consensus disorder prediction 152 167 - -
Vium2405g00002 327 MobiDBLite consensus disorder prediction 143 167 - -
Vium2405g00002 327 Pfam TCP family transcription factor 70 153 IPR017887 -
Vium2405g00002 327 ProSiteProfiles TCP domain profile. 70 124 IPR017887 -
Vium2405g00002 327 MobiDBLite consensus disorder prediction 19 37 - -
Vium2405g00002 327 MobiDBLite consensus disorder prediction 254 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2405g00002 Vium-Chr2405 13810 15271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2405g00002 1 318 TCP Transcription Factor Family AT5G51910 50.450 6.56e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium2405g00002 TCP 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2405g00002 - - gmx:100819475 461.455