Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2404g00001 ATGGATCGAGAAAATGGCGACGGTGACATTGAAGGCGGTGGCGGCGATGATGGTTTTCGCTCGGGCCGCAAGTATCGTCCTGTCTTGGCCAATGATCGCGCGGTACTCGAAATGTCTTCCATAGATCCGGGATCTACTTCTTCTTCCACTTCTGCTTTTACAGATATTCCTTCTAATCTCAGAAAAGTGAAAACTAGTCTTAGTGGGAGTTCGGATGCTAAAGAAGGCAACGCTTCTCATCAACAGCAACCTAATGGATCCCAGCAGCAGGAATCTAAATTGGAACTGTTCGGTTTTGACTCTCTTGTCAACATTCTTGGTCTCAAAAGTATGACTGGTGAGCAGGTTGCACAACCATCAAGTCCTAGAGATGGTGAGGATATATCTATCACTGCTGGCTTGCCAAAGCCTGCTGCTCCCAAACTTGGTACATTGATGGGTGTATTTATTCCATGTATTCAAAGCATTTTGGGCATCATCTACTACATTCGTTTCTCTTGGATTGTTGGCATGGCTGGCATAGGACAAACATTGTTGCTTGTTTCTTTATGTGGCACCTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGTGCCATGAAGGGTGGGGGACCTTACTATCTAATAGGTCGAGCCCTTGGTCCTGAAGTTGGAGTTAGCATTGGTCTATGCTTCTTCCTTGGAAATGCTGTTGCTGGAGCACTTTATGTATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTGCTGCTGGGATCTTTAGAGAGGCTGCCACACAAGTTAACGGGACTGCAGTTACACAACCAATAGAGAGTCCAAGTTCTCATGACTTGCAAATATATGGGATTGTTGTGACTATTTTGTTATGCTTTATTGTATTTGGAGGTGTGAAGATGATAAATCGGGTTGCACCTGCTTTTCTCATACCTGTTTTATTTTCAGTCGTCTGCATATTTTTGGGAATTTTTGTGGCAAGGAAGGACCATCCCACAGGAATGTGA 1014 0.4389 MDRENGDGDIEGGGGDDGFRSGRKYRPVLANDRAVLEMSSIDPGSTSSSTSAFTDIPSNLRKVKTSLSGSSDAKEGNASHQQQPNGSQQQESKLELFGFDSLVNILGLKSMTGEQVAQPSSPRDGEDISITAGLPKPAAPKLGTLMGVFIPCIQSILGIIYYIRFSWIVGMAGIGQTLLLVSLCGTCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAGIFREAATQVNGTAVTQPIESPSSHDLQIYGIVVTILLCFIVFGGVKMINRVAPAFLIPVLFSVVCIFLGIFVARKDHPTGM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2404g00001 337 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 79 330 IPR004842 GO:0006811|GO:0015377|GO:0016020
Vium2404g00001 337 MobiDBLite consensus disorder prediction 38 91 - -
Vium2404g00001 337 Gene3D Amino acid/polyamine transporter I 140 336 - -
Vium2404g00001 337 MobiDBLite consensus disorder prediction 40 91 - -
Vium2404g00001 337 MobiDBLite consensus disorder prediction 1 25 - -
Vium2404g00001 337 Pfam Amino acid permease 147 334 IPR004841 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2404g00001 Vium-Chr2404 3594 11854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2404g00001 142 334 Inorganic Solute Cotransporters AT1G30450 83.938 1.86e-111 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2404g00001 K14427 - vum:124830422 620.542