Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2403g00001 ATGGATTCTCAATCTAACAACGGCATCAGCTACCCCACTTCGGAGCCCAATCTCTGCGCCAACAACTGCGGTTTCTTCGGCACTCCCGACAAAGGAAACTTCTGTTCCAAATGCTACAAGGAACTTTGTCTCCAGGAGTATCCTTCTGCGATAAACTCTCTCTTCTGTCCCTCCGCGCCGCCAGCGTTTCTTGACGAGGTAAAGCCATCCTCTTCGGTCGAGCAGTCGCCGCCGTGCGCGGCTGGGCCTTCCAAACCCAAGAATCGGTGCGGGCATTGTAACAGAAAAGTGGGTTTAACCGGGTTCCTGTGCAAGTGTGGGACCATCTTCTGCGGGGTGCACCGTTACCCGGAGAAGCACGAGTGTACCTATGACTTCAAGGCTGCAGGGCGTGAAGCGATTTCTAAGGAAAATCCTACTGTAAAGGGTGAGAAGGTGCAAAGGTTTTAG 450 0.5311 MDSQSNNGISYPTSEPNLCANNCGFFGTPDKGNFCSKCYKELCLQEYPSAINSLFCPSAPPAFLDEVKPSSSVEQSPPCAAGPSKPKNRCGHCNRKVGLTGFLCKCGTIFCGVHRYPEKHECTYDFKAAGREAISKENPTVKGEKVQRF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2403g00001 149 Gene3D - 1 59 - -
Vium2403g00001 149 ProSiteProfiles Zinc finger AN1-type profile. 84 130 IPR000058 GO:0008270
Vium2403g00001 149 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Vium2403g00001 149 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 52 - -
Vium2403g00001 149 Gene3D - 65 145 IPR035896 -
Vium2403g00001 149 PANTHER AN1-TYPE ZINC FINGER PROTEIN 16 148 - -
Vium2403g00001 149 Pfam AN1-like Zinc finger 90 126 IPR000058 GO:0008270
Vium2403g00001 149 SMART AN1_Zf_4 90 127 IPR000058 GO:0008270
Vium2403g00001 149 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Vium2403g00001 149 SUPERFAMILY AN1-like Zinc finger 81 144 IPR035896 -
Vium2403g00001 149 FunFam Zinc finger AN1-type containing 6 65 145 - -
Vium2403g00001 149 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2403g00001 Vium-Chr2403 4929 5409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2403g00001 18 149 C2H2 Transcription Factor Family AT3G52800 39.744 8.35e-34 115