Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2402g00028 ATGGGTGCCGTTGTCGAGTGTTACCCGCCACCGCGTACGGCGATGCTGTCTCTCAATACGCTGCCGCTGGGCTTTCGTTTCCGTCCCACTGATGAAGAGCTTATCGATTACTACCTGCGCTCGAAGATCAACGGAAACGAGGACGATGTCTGGGTTATCCGTGAGATTGATGTCTGCAAATGGGAGTCCTGGGATTTGCCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTTTGTCCGCAGGATCGGAAGTATCCCAATGGGCACAGGTTGAACCGAGGTAGGACACATGGGTATTGGAAAGCAACGGGGAAGGATCGAAAGATTAAGTCTGGTTCTGCTTTGATCGGAATGAAAAAGATTCTTGTTTTCTATACTGGTCGTGCACCGAAGGGGAGTACAGGCCTACCTTGA 426 0.507 MGAVVECYPPPRTAMLSLNTLPLGFRFRPTDEELIDYYLRSKINGNEDDVWVIREIDVCKWESWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRGRTHGYWKATGKDRKIKSGSALIGMKKILVFYTGRAPKGSTGLP 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2402g00028 141 Pfam No apical meristem (NAM) protein 22 135 IPR003441 GO:0003677|GO:0006355
Vium2402g00028 141 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 137 - -
Vium2402g00028 141 Gene3D NAC domain 30 139 IPR036093 GO:0003677|GO:0006355
Vium2402g00028 141 SUPERFAMILY NAC domain 13 137 IPR036093 GO:0003677|GO:0006355
Vium2402g00028 141 ProSiteProfiles NAC domain profile. 21 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2402g00028 Vium-Chr2402 142581 143547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2402g00028 16 136 NAC Transcription Factor Family AT4G35580 73.554 9.98e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2402g00028 NAM 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2402g00028 - - vum:124830415 305.834