Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2399g00006 ATGAATGCTAAAGTACAAGACTCTGACGATACCAAAAAGGGTGAAGAAGTTGTGCTTCCTGGCTTTAGATTCCACCCTACAGATGAAGAACTTGTTGGGTTTTATCTCCATAGAAAGGTGGAAAAGAAGCCTCTCAAAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAGGTGAATTCATTTGGGGACAAAGAATGGTATTTTTTCTGCATAAGAGGGAGGAAGTACAGGAACAGTGTGAGGCCAAACAGGGTAACTAGGTCAGGGTTTTGGAAAGCCACAGGAATAGACAAGTCGATATACTGCGTGAAGGAACCCCATGACTGCATTGGCCTGAAGAAGTCTTTGGTGTACTATCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCACCCAATGCTAAATCCTCCGCCAACATTGCTAATACTACCAATAACCTTCATGAAGCTGTAAGTCATTTTATTTATACACACATATATATACATCTTCTTCTCCTTACTTTAGGTTTAAAGCTATGTTTTAAGTCCATGACATGCCTAAATTTTAAAACAAAAAATAGTATATGGCCTAACGAGAAACATCATACTCAAGCTTATAGCAGGAATACCAAGGGCAAGAAACACCAGGTACTTAGAGGAATTGCTACAAAGCTTATTGTTGTAAATCTTAGTCAAAATGGTAGCACTAAGTCCCCCTTAACCTTTCAGAACCCCATCGACAAAGCCTCTGCTAGCAAGGAAGATTCCCAGTTTCTACAAGAATCCCCTATCCTTCCTAGTCACAACTAA 837 0.4002 MNAKVQDSDDTKKGEEVVLPGFRFHPTDEELVGFYLHRKVEKKPLKIELIKQVDIYKYDPWDLPKVNSFGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVKEPHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNAKSSANIANTTNNLHEAVSHFIYTHIYIHLLLLTLGLKLCFKSMTCLNFKTKNSIWPNEKHHTQAYSRNTKGKKHQVLRGIATKLIVVNLSQNGSTKSPLTFQNPIDKASASKEDSQFLQESPILPSHN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2399g00006 278 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 238 - -
Vium2399g00006 278 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Vium2399g00006 278 Gene3D NAC domain 27 176 IPR036093 GO:0003677|GO:0006355
Vium2399g00006 278 SUPERFAMILY NAC domain 14 152 IPR036093 GO:0003677|GO:0006355
Vium2399g00006 278 ProSiteProfiles NAC domain profile. 18 178 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2399g00006 Vium-Chr2399 113526 130350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2399g00006 6 147 NAC Transcription Factor Family AT5G39820 69.014 1.29e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2399g00006 NAM 1.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2399g00006 - - gmx:100819795 316.62