Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2399g00005 ATGTTATTGGTGGTTGTTCGGGGCGGGGAGATGATTAAACAAGTGGCAGAGGAGCGTCTCAGACATTTTGAAGGCGTAGAAGCCAAAGGAAGGAAGCTATCTCCAATTTGTTCATTCCCACATCGACTAACTCTCCCATCACTTATCTATCTATCTATCTATCTTAAATGTCAGTTTCAGTACCATGGCTACAGGGATTGGCCTTGTCTCGGTGACCAGATCCAAAAATTGTACCATCCAAACCCTAACTCCATCACCACCTCTCCTCCTCCCTCACCCTCTTGGATGTGGAATCCAAGGGACCAAGAAGATGACTCCTGGGAGGTCAGAGCCTTTGCAGAGGACACCAGCAACATCATGGGCACCACTTGGCCTCCAAGGTCCTACACCTGCACTTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTCGGTGGCCACATGAACGTTCACCGCCGCGACCGTGCTCGCCTCCACCAAGCCTCACCCATCAACCACCGCCACCACCACCCCATCTCCTCTCTCTCCCGCTCACACCACTCTTCCTCTTTTCTCAACCTCTCTCACTCTCCGGACCCTTTCGCAAATGGTGGGGTGTGCCTCTTGTACCCCTTCCCTAGCCCTAACACTGCTCCATTCTCCCCTCTTGGCCACACCACCAGTTTCAATAATGCATGTGCTGACTCTCCCTCCTCTCTTTTCTCTGTCTCCTCTTCCCTTTCACACCCTCCAATGAGCCTCCCAACTTGCTCAAATGCCTCCTTTGATTTCCCAGTGGCGGAGCCTGCCACAAGGAGGAGGACCGTTCTCTCTTCTTATTCTGGGAAAGGGGAACAAGAACCCGCAACCTCCTCCGCTCATCATGGCCAACACGAGGAGCTTGATCTAGAGCTCCGTTTGGGAAATAGATCAACATCAACGCCATGA 927 0.5243 MLLVVVRGGEMIKQVAEERLRHFEGVEAKGRKLSPICSFPHRLTLPSLIYLSIYLKCQFQYHGYRDWPCLGDQIQKLYHPNPNSITTSPPPSPSWMWNPRDQEDDSWEVRAFAEDTSNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQASPINHRHHHPISSLSRSHHSSSFLNLSHSPDPFANGGVCLLYPFPSPNTAPFSPLGHTTSFNNACADSPSSLFSVSSSLSHPPMSLPTCSNASFDFPVAEPATRRRTVLSSYSGKGEQEPATSSAHHGQHEELDLELRLGNRSTSTP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2399g00005 308 MobiDBLite consensus disorder prediction 266 308 - -
Vium2399g00005 308 MobiDBLite consensus disorder prediction 267 284 - -
Vium2399g00005 308 Pfam C2H2-type zinc finger 129 153 - -
Vium2399g00005 308 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Vium2399g00005 308 SUPERFAMILY beta-beta-alpha zinc fingers 126 156 IPR036236 -
Vium2399g00005 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Vium2399g00005 308 SMART c2h2final6 129 151 IPR013087 -
Vium2399g00005 308 MobiDBLite consensus disorder prediction 285 299 - -
Vium2399g00005 308 PANTHER OS07G0101800 PROTEIN 101 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2399g00005 Vium-Chr2399 97747 99280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2399g00005 94 193 C2H2 Transcription Factor Family AT4G17810 57.407 6.98e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2399g00005 zf-C2H2_6 7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2399g00005 - - vum:124830394 568.155