Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2399g00003 ATGACGGAGGAATCAAACAAACCAATGGATGATGCATCAGCACCCAACTGGTTATCTGATTTGGACATGGATGATTACAATTTATTTCCAGATGAGTGTGCCCTGAACTTGAACTTGTTTGATGATCAAGAGTTTCTGCCACAAGACATTGCCAGTGCCCTTGAAGAACAGACACAGAGCCTGCAGCGATCTTTGTCTTCGGAGTGCCCTTCCAAAACTGTGAGCAACTCATCCACCGATGAAACCAGTTTTGACTTTGAGAGACCAGCCAAGTTACTGAAAACGACAAGCAGTAGTTGCTGTAACTCTGACTCATCCACCATCACCAACAACCTCTCGCCAAAACTTTCCCCATCCACATCCTTCTCCTCCTTTCAGTCTCATATTCTGTCTTTTGACAACCCCAACTCCTCCTCTCCCACCACCACCACCACCACCACCACCCACTTTTACGGCTTTGACTTAAACCCAACGCAGAACGAAATGGTGTCAGTGTCAATGCCCCAATTGACAAAATCACGCTTCCCTGATCAAACGCCAAAAGGGTCCTCAAAAAATCACAACTTTGAAACAAAACCCTCACATGGTAAGAGATCTCCTGCTCACGCTCAGGATCACATCATGGCCGAGAGGAAGCGAAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAGAAGATGGATAAGGCTTCTGTGTTAGGGGACGCTATCAAATATGTGAAAGATCTTAAAGAGCGTTTGGCAGTGCTTGAAGAGCAGAGCAAGAAAACAAGGGAAGAATCGGCGGTGGTCCTGAACAAGCCAGAGCTCTCTGGCGATGATGATTCTTCTTCATGTGATGAGTGCATTGGTGCTGATAGTGTCAGTGACACTCTGTTTGAGGTGGAATCAAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCTCAAGCAAAAGGGGCTTCTCGTCAAATTACTGGCCGAGATCCAAAGAAATAACCTACTCGTTATTAATAGCAGCATCTTACCATTCGGTGATTCTATCCTTGACATTACCATAGTTGCTCAGATGGGAGAAAATTACAATTTGACTATGAAGGAACTTGCCAAGAACCTACGCGTTTCGGCAAATAAGGTTGTCTCATAA 1152 0.4592 MTEESNKPMDDASAPNWLSDLDMDDYNLFPDECALNLNLFDDQEFLPQDIASALEEQTQSLQRSLSSECPSKTVSNSSTDETSFDFERPAKLLKTTSSSCCNSDSSTITNNLSPKLSPSTSFSSFQSHILSFDNPNSSSPTTTTTTTTHFYGFDLNPTQNEMVSVSMPQLTKSRFPDQTPKGSSKNHNFETKPSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLAVLEEQSKKTREESAVVLNKPELSGDDDSSSCDECIGADSVSDTLFEVESRVSGKEMLLRIHCLKQKGLLVKLLAEIQRNNLLVINSSILPFGDSILDITIVAQMGENYNLTMKELAKNLRVSANKVVS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2399g00003 383 SMART finulus 207 256 IPR011598 GO:0046983
Vium2399g00003 383 PANTHER BHLH TRANSCRIPTION FACTOR 59 377 - -
Vium2399g00003 383 MobiDBLite consensus disorder prediction 61 82 - -
Vium2399g00003 383 Pfam Helix-loop-helix DNA-binding domain 205 250 IPR011598 GO:0046983
Vium2399g00003 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 268 IPR036638 GO:0046983
Vium2399g00003 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Vium2399g00003 383 MobiDBLite consensus disorder prediction 172 187 - -
Vium2399g00003 383 CDD bHLH_AtNAI1_like 202 274 - -
Vium2399g00003 383 Coils Coil 240 267 - -
Vium2399g00003 383 MobiDBLite consensus disorder prediction 188 212 - -
Vium2399g00003 383 MobiDBLite consensus disorder prediction 172 212 - -
Vium2399g00003 383 Gene3D - 194 268 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2399g00003 Vium-Chr2399 21045 23138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2399g00003 88 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.275 2.42e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2399g00003 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2399g00003 - - var:108333272 671.389