Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2399g00001 ATGACCTCAATGGAGGAATCGTGGACTAGTTGGCTCTGTGATATGGAGCCAGATGATTACAGTTTCATCGGTCAATCAGACACAAAGGTGGAGGATGTTAATGGAAGTTTAGCATCTCCTCGTGATATAGCCACTGCATTAGAAGAGAATCCGCAGAGCTCATTTTCCACTGAGAGTCACTCTTCAGTGACTGAGAGTGGCATAGAAGAGAGGCCTTTGAAGTTAATCAAGACATGCACTTCAAACTCTGCCAAAACAGACCAACTCTCACAAATGAGAGCTTCCACACCCTGCTCCTATATTCTTTCCTTTGACAACACCAATCCACCAACACCTAAGGTTGAATCGGCTATAAAGCCAGAAACCAAGGTTGTGAAACGTGGGATAGCTCTGCCTTCAAAGAATGAACCAAAACGTGTTACTCAGGAGAGCAAGAAAACGGGCTCATCAGCCAGATCTTCTCATCACACACAAGATCACATAATTGCCGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCCCTCTCATCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCTGTATTGGTGGAAGCTATAAGGTACGTGAAGGAGTTGAAGGAAAAAGTGAAAGTGATGGAGGAACAGGGCAAAAGGAAAAGCCATGAACCGGTGACGTGTGGGAAGAAAGCTCAGGTTTGTGCTGCCGCGGACGAGGATGTCTCAGACACTTCATCAAATTCCGGTGAGTTCGGAAATTCTGACGATCCCTCATCCAAAACAAATCTGTTACTGCCAGAAGTAGAAGCAAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCTCTGCGAGAAAGAAAAGGCAGTGTTGGCGAACATTTTTAGAGAGGTAGAGAAACTTCATCTCTCAGTCATCTATAGCAGCGCCTTATCTTTCGGCTCCTCTGTTCTCGACACAACCATCGTAGCCGAGATGGAAGATGAATTCAACATGAGCGTGAAGGAACTGGCTGGAAATCTGAGAGTAGGACTGATGCAGTTTATGTAG 1041 0.4534 MTSMEESWTSWLCDMEPDDYSFIGQSDTKVEDVNGSLASPRDIATALEENPQSSFSTESHSSVTESGIEERPLKLIKTCTSNSAKTDQLSQMRASTPCSYILSFDNTNPPTPKVESAIKPETKVVKRGIALPSKNEPKRVTQESKKTGSSARSSHHTQDHIIAERMRREKISQQFIALSSLIPDLKKMDKVSVLVEAIRYVKELKEKVKVMEEQGKRKSHEPVTCGKKAQVCAAADEDVSDTSSNSGEFGNSDDPSSKTNLLLPEVEARVSKKNVLIRILCEKEKAVLANIFREVEKLHLSVIYSSALSFGSSVLDTTIVAEMEDEFNMSVKELAGNLRVGLMQFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2399g00001 346 PANTHER BHLH TRANSCRIPTION FACTOR 53 345 - -
Vium2399g00001 346 Pfam Helix-loop-helix DNA-binding domain 159 204 IPR011598 GO:0046983
Vium2399g00001 346 SMART finulus 161 210 IPR011598 GO:0046983
Vium2399g00001 346 MobiDBLite consensus disorder prediction 138 159 - -
Vium2399g00001 346 Coils Coil 194 221 - -
Vium2399g00001 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 221 IPR036638 GO:0046983
Vium2399g00001 346 MobiDBLite consensus disorder prediction 237 258 - -
Vium2399g00001 346 MobiDBLite consensus disorder prediction 127 159 - -
Vium2399g00001 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Vium2399g00001 346 MobiDBLite consensus disorder prediction 47 63 - -
Vium2399g00001 346 MobiDBLite consensus disorder prediction 47 68 - -
Vium2399g00001 346 Gene3D - 156 232 IPR036638 GO:0046983
Vium2399g00001 346 MobiDBLite consensus disorder prediction 236 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2399g00001 Vium-Chr2399 701 2618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2399g00001 9 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 36.628 1.27e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2399g00001 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2399g00001 - - gmx:100787596 467.618