Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2398g00002 ATGTCTCTCCACCGCCATGTTTGCAGAACCTCAAAGCTATCAAAGATCCCTAGGAAGTACAAGCAGTTCGCCATAGCACAGGGGCAGAAGTCTGTTACTGATTATCTCCACGCCACGCGCTGCATTCCTTACGCCTTCGCTGATCAAATCTCCAAGAACTCCAACAATGCCCTCATGAATCTCATCACCAAGCTCAGTGCTTTCTCCCCTCCCCACTATCCCCACAACCTCAACAAGTTCCTCAGGTACAACCCCATCAACGAATTCGAGTTCTTCTTTGAGAGCATTGGCATACACCCTTCAAAGTTCCCCTCTTTGTTTCCCCAGAACAAGTTCTTCTTTTCAGAAGATGAGACCCTTTTGGATGCTGCTTATGTTCTCAGCGAATTTGGATTTCCCTGGGACAAGCTTGGAGTGCTGTATGAGGAGAGTGGGTGGGTGTTCAAGTGGGGTGCTTTTGAATTGAATGATAGGCTTTGTGGATTCAAAGGGTATGGTTTTTGCAATGTGCAGGTTGTGGGGATATGCTTGGCTTTCCCATTTGTGTTTGATGGCCAGAAGGGTGCTGAGGTTGAGGCTTTGTTTTGTGATCTGAGGTTGCTGTTTGGGAAGTTTGGTTTGGCTGAGTGTGTTGAAGAGAAGGGGAATGGTGTGGATGATTGGGTTGGGTTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGAGGAAAGAACATAGGGGAGTTAATTGGAGGGAGCAATGGCGTTGGTGTAGGTGTTGTTGTTGAGCATGGGGAAGAGGAGTTGGTTCAAGCAATTGAGTATTTTTGTAGGTTTGGTGCGAAGAAAGAGGACGTGGCACGATTGATTGTGAATGGACCGGAATTGTTGGAACTTGTTTTGAACATGGGGAAGGTCAATGTGTTGAAGCTGTTGAAACACTTTGGAATGAGTTCCAATGATGTTGATATTGTTAAGAGGGACTATGCTCATGTGTTGGGGACAGTCAAGCTGTGTAACCTGCCAAATGTGATGAGAGCTTTGGGTTTACATGAGTGGTTCTTTGAGAAGATTAAGGATGGGAATCATAGTTTGTTGGTTAGTTTTGTCGCGAACAATCGCGAAGTGGTCGGAGATAAAGGTTATCCAAGTTTTTTGAAGGCTATTGAGGTGTCTAAATCTCCAATTCACAATATGAGTAAGTTGAACTTCTTGCATGGCATTGGCTTTGGAGAAAATGCTTTGACCATGTATATTTTCTCTTATATGCACGGAACAAGTGATGAGTTACAAAAGAGATTTGATTGCCTTCTACATCGTGGGATTGACTTTTCAAAGGTCTGTAAAATGATCACGGTTGATCCCAAGATTCTTCGCCAAAACCCTGAACGTTTGGAGCAAAAGATTAATTTCTTGTGTCAGGAAATGGGACAGTCACTTGAGATTTTGGTGACTTTTCCATCATTCTTGTGCTTTGACTTAGAGAATCGCATTAAGCCCAGGTATAGGTTCCATTTGTGGATTATGGAAAAGGGTCTGTCTTCCAAAAGATATTCTATTGCAAGCATAGTTGCAACAAGCAACAGGAATTTTGTTTCCCGTGCTTTTAAAATCCATCCTGCTGCTCCGAAACATTGGTTTGAGCAATTTATTCCCTGA 1641 0.4327 MSLHRHVCRTSKLSKIPRKYKQFAIAQGQKSVTDYLHATRCIPYAFADQISKNSNNALMNLITKLSAFSPPHYPHNLNKFLRYNPINEFEFFFESIGIHPSKFPSLFPQNKFFFSEDETLLDAAYVLSEFGFPWDKLGVLYEESGWVFKWGAFELNDRLCGFKGYGFCNVQVVGICLAFPFVFDGQKGAEVEALFCDLRLLFGKFGLAECVEEKGNGVDDWVGLCRKIRLFYDLNGGKNIGELIGGSNGVGVGVVVEHGEEELVQAIEYFCRFGAKKEDVARLIVNGPELLELVLNMGKVNVLKLLKHFGMSSNDVDIVKRDYAHVLGTVKLCNLPNVMRALGLHEWFFEKIKDGNHSLLVSFVANNREVVGDKGYPSFLKAIEVSKSPIHNMSKLNFLHGIGFGENALTMYIFSYMHGTSDELQKRFDCLLHRGIDFSKVCKMITVDPKILRQNPERLEQKINFLCQEMGQSLEILVTFPSFLCFDLENRIKPRYRFHLWIMEKGLSSKRYSIASIVATSNRNFVSRAFKIHPAAPKHWFEQFIP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2398g00002 546 Pfam mTERF 421 525 IPR003690 GO:0003690|GO:0006355
Vium2398g00002 546 Gene3D Transcription termination factor 3, mitochondrial 255 544 IPR038538 -
Vium2398g00002 546 PANTHER CGI-12 PROTEIN-RELATED 31 532 IPR003690 GO:0003690|GO:0006355
Vium2398g00002 546 SMART mt_12 442 473 IPR003690 GO:0003690|GO:0006355
Vium2398g00002 546 SMART mt_12 474 508 IPR003690 GO:0003690|GO:0006355
Vium2398g00002 546 FunFam Transcription termination factor MTEF18, mitochondrial 380 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2398g00002 Vium-Chr2398 15531 18697 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium2398g00002 mTERF 9.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2398g00002 - - var:108346236 942.184