Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2396g00002 ATGGCTCTTGTTATCTTGATGGGTTTTCTCACAATGCTCTCCTCTGCTCGTGCTTATGATGGAGGGTGGACTAGTGCTCATGCCACTTTCTATGGAGGGAGTGATGCATCAGGGACAATGGGTGGAGCATGTGGGTATGGAAACCTCTACAGCCAAGGCTATGGAACAAACACTGCTGCTTTGAGCACTGCGCTGTTCAACAATGGGTTAAGCTGTGGCTCTTGCTTTGAGATTAGGTGTGCAAATGACCACAAGTGGTGCCTTCCTGGATCCATTTTGGTAACTGCCACCAATTTCTGTCCACCAAACAATGCCTTACCAAACAATGCTGGTGGCTGGTGTAACCCTCCTCTTCAACACTTTGATCTCGCTCAGCCCGTCTTCCTACGCATTGCTCAATACCGCGCTGGAATTGTGCCTGTGTCCTACAGAAGGGTGCCCTGCAGGAGAAAGGGAGGGATCAGATTCACCATCAATGGACATTCTTACTTCAACCTAGTCCTCATCACAAACGTGGGCGGTGCTGGAGATGTGCATGGTGTGGCTGTCAAAGGTTCAAGAACTGGTTGGATGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTATCTGAATGGTCAAAGCCTCTCCTTCAAGGTTACCACAAGCGATGGCCGAACTGTGGTGTCGAACAATGTTGCACCAGCTGGTTGGTCCTTTGGACAAACATACACCGGTGCTCAATTCCGCTAG 741 0.4993 MALVILMGFLTMLSSARAYDGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIRCANDHKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVSYRRVPCRRKGGIRFTINGHSYFNLVLITNVGGAGDVHGVAVKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTYTGAQFR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2396g00002 246 SMART dpbb_1 58 143 IPR007112 -
Vium2396g00002 246 FunFam Expansin 153 245 - -
Vium2396g00002 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 153 IPR007112 -
Vium2396g00002 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 242 IPR007117 -
Vium2396g00002 246 SUPERFAMILY PHL pollen allergen 150 242 IPR036749 -
Vium2396g00002 246 FunFam Expansin 12 149 - -
Vium2396g00002 246 Pfam Lytic transglycolase 58 143 IPR009009 -
Vium2396g00002 246 Gene3D - 153 245 IPR036749 -
Vium2396g00002 246 PRINTS Expansin/Lol pI family signature 22 37 IPR007118 GO:0005576
Vium2396g00002 246 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Vium2396g00002 246 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Vium2396g00002 246 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Vium2396g00002 246 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Vium2396g00002 246 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Vium2396g00002 246 Pfam Expansin C-terminal domain 154 231 IPR007117 -
Vium2396g00002 246 CDD DPBB_EXPA_N 22 148 - -
Vium2396g00002 246 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Vium2396g00002 246 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Vium2396g00002 246 PRINTS Expansin signature 128 141 IPR002963 GO:0009664
Vium2396g00002 246 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Vium2396g00002 246 PRINTS Expansin signature 53 67 IPR002963 GO:0009664
Vium2396g00002 246 PRINTS Expansin signature 80 91 IPR002963 GO:0009664
Vium2396g00002 246 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Vium2396g00002 246 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Vium2396g00002 246 PRINTS Expansin signature 111 128 IPR002963 GO:0009664
Vium2396g00002 246 Gene3D - 9 149 IPR036908 -
Vium2396g00002 246 PANTHER EXPANSIN-A15 3 245 IPR002963 GO:0009664
Vium2396g00002 246 SUPERFAMILY Barwin-like endoglucanases 22 171 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2396g00002 Vium-Chr2396 45337 47214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2396g00002 4 246 Expansin Gene Family AT2G03090 83.128 2.81e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2396g00002 - - gmx:100527059 479.944