Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2396g00001 ATGGCTCTTGTTATCTTGATGGGTTTTCTCACAATGCTCTCCTCTGCTCGTGCTTATGATGGAGGGTGGACTAGTGCTCATGCCACTTTCTATGGAGGGAGTGATGCATCAGGGACAATGGGTGGAGCATGTGGGTATGGAAACCTCTACAGCCAAGGCTATGGAACAAACACTGCTGCTTTGAGCACTGCGCTGTTCAACAATGGGTTAAGCTGTGGCTCTTGCTTTGAGATTAGGTGTGCAAATGACCACAAGTGGTGCCTTCCTGGATCCATTTTGGTAACTGCCACCAATTTCTGTCCACCAAACAATGCCTTACCAAACAATGCTGGTGGCTGGTGTAACCCTCCTCTTCAACACTTTGATCTCGCTCAGCCCGTCTTCCTACGCATTGCTCAATACCGCGCTGGAATTGTGCCTGTGTCCTACAGAAGGTAG 438 0.4932 MALVILMGFLTMLSSARAYDGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIRCANDHKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVSYRR 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2396g00001 145 SMART dpbb_1 58 143 IPR007112 -
Vium2396g00001 145 SUPERFAMILY Barwin-like endoglucanases 22 145 IPR036908 -
Vium2396g00001 145 PRINTS Expansin signature 80 91 IPR002963 GO:0009664
Vium2396g00001 145 PRINTS Expansin signature 53 67 IPR002963 GO:0009664
Vium2396g00001 145 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Vium2396g00001 145 PRINTS Expansin signature 128 141 IPR002963 GO:0009664
Vium2396g00001 145 PRINTS Expansin signature 111 128 IPR002963 GO:0009664
Vium2396g00001 145 Gene3D - 9 145 IPR036908 -
Vium2396g00001 145 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Vium2396g00001 145 PRINTS Expansin/Lol pI family signature 22 37 IPR007118 GO:0005576
Vium2396g00001 145 PRINTS Expansin/Lol pI family signature 136 145 IPR007118 GO:0005576
Vium2396g00001 145 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Vium2396g00001 145 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 145 IPR007112 -
Vium2396g00001 145 FunFam Expansin 12 145 - -
Vium2396g00001 145 PANTHER EXPANSIN-A15 3 145 IPR002963 GO:0009664
Vium2396g00001 145 Pfam Lytic transglycolase 58 143 IPR009009 -
Vium2396g00001 145 CDD DPBB_EXPA_N 22 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2396g00001 Vium-Chr2396 38209 39173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2396g00001 4 145 Expansin Gene Family AT2G03090 80.986 2.17e-85 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2396g00001 - - gmx:100527059 284.648