Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2395g00021 ATGGTGTCAAAATCCTATTCAAACCTATTGGAGTTGGCCTCGGGAGAGGCTCCTTCATTTGGGTACATGAACAGGAGAATTCCAAGAATTATGACCGTGGCTGGGTTGATATCAGATGTTGATGACGACCCAGCGGATAGTGTGTGCTCTGATCCGTCGTCGTCGACGGCGCACCGTGACCGGATAATCATGGTGGCTAATCAGCTTCCCATAAGGGCTCAGAGGAGGCCAGATGGGAATAGGAGTTGTTGGTGTTTTGAGTGGGATGAGAATGCCCTTCTTCAGCTGAAAGATGGGTTAGGGGATGATGATATAGAGGTTATTTACGTTGGATGTCTTAAGGAGGAGGTGCATCCAAGTGAACAAGATGAGGTTTCACAGACACTTCTTGAGACCTTCAAGTGTGTCCCAACTTTTCTTCCGGCTGACCAGTTCACCAAGTTCTATCATGGTTTCTGCAAGCAGCAGCTGTGGCCACTGTTCCATTACATGTTGCCCTTGTCACCAGAACTTGGTGGGAGGTTTAACAGGTCACTATGGCAGGCTTATGTGTCAGTCAATAAAATTTTTGCAGATAGGATCATGGAAGTTATCAACCCTGAAGATGACTATGTGTGGATACATGATTATCATCTGATGGTGTTGCCAACTTTCTTGAGGAAGAGGTTCAACAGGGTGAAATTGGGGTTCTTCCTTCACAGCCCTTTCCCTTCATCAGAGATATACAAGACATTGCCTGTTAGGGAGGAGATCTTGAGAGCCCTCCTTAATTCGGATTTGATAGGCTTCCACACTTTTGATTATGCTCGCCATTTCCTCTCCTGTTGCAGCCGGATGCTAGGCCTTACCTACGAATCAAAGAGAGGTTATATTGGGATTGAATACTATGGTAGGACTGTTAGTATCAAAATTCTTCCTGTTGGCATTCACATGGGTCAGCTCCAATCTGTTTTGAAGATGCCTCAGACTGAGGACAAAGTTTGTGAGCTCATCAAACAGTTTTCTGATCAAGGAAGGACATTGTTGCTTGGGGTGGATGACATGGATATTTTCAAGGGAATAAGTTTGAAGCTATTGGCCATGGAGCAGCTTCTCATTCAGCACCCTGAGTATCAGGGAAAGGTAGTGCTAGTGCAGATAGCCAATCCTGCTAGGGGACGGGGCAAGGATGTGAAAGAAGTGCAGGCAGAGACAAAGGCCACAGTGAAACGGATTAATGAAACATTTGGGAAACCAGGGTATGATCCTGTGATTCTGATAGAGGAGCCTCTCAAGTTTTATGAGAGAGTGGCTTATTATGTTGTTGCAGAGTGTTGTTTAGTAACTGCAGTAAGGGATGGAATGAATCTCATACCGTATGAATATATTATCAGTCGTCAGGGAAATGAAATGTTGGATAAAGTTTTGGGTCTAGCTTCCTCTCCTAAGAAGAAAAGCATGCTGGTTGTGTCTGAATTCATTGGCTGTTCCCCATCCTTGAGTGGAGCAATCAGAGTGAATCCGTGGAACATTGATGCAGTAGCCGATGCAATGGACTCTGCTCTGGAAATGGCTGATTCAGAGAAGGAGCTTAGGCATGAGAAGCATTATAGATATGTTAGTACTCATGATGTTGGGTACTGGGCTAGAAGCTTCTTGCAAGATTTGGAAAGGACTTGTCGTGATCATGTGAGACGAAGGTGGTGGGGGATTGGGTTTGGATTAAGCTTTAGAGTTGTTGCACTTGATCCAAACTTCAAGAAGCTCTCAATGGAGCACATAGTTTCAGCATACAAGAGGACAACAACTAGAGCAATCCTTCTTGACTATGATGGTACACTGATGCCTCAATCATCAACAATTGATAAGAGTCCAAGCAGTAAATCCATTGAAATCCTTAGTAGTTTGTGTAGAGATAAGAACAACATGGTTTTCCTTGTTAGTGCTAGAAGCCGAAAGATGCTTTCAGAATGGTTTTCTTCTTGTGAGAATCTGGGAGTTGCAGCTGAGCACGGTTACTTTCTTAGAATGAGGCGAGATGAAGAGTGGGAAACACATGTTGCGGCAACAGATTGTAGTTGGAAACAGATTGCAGAACCTGTTATGAAACTTTATACTGAAACAACTGATGGATCCACCATTGAAGACAAGGAGACTGCACTTGTATGGTGCTATGAGGATGCAGATCCAGACTTTGGATCATGCCAAGCTAAGGAACTTCTTGATCACCTTGAGAGTGTGCTTGCAAATGAACCTGTAACAGTCAAGAGTGGCCAGAATAATGTAGAGGTTAAACCACAGGGTGTGAGCAAGGGACTAGTGGCCAAACGCCTACTTTCTGCCATGCAAGAAAAGGGAATGTACCCTGATTTTGTTCTGTGCATAGGAGATGACAGGTCTGATGAAGACATGTTTGAGGTGATCACCAGCTCGATGGGCGGGCCGATCGCCCCACGGGCCGAAGTTTTCGCCTGCACCGTATGCCGAAAACCGAGTAAGGCTAAGTACTATCTGGATGACACAACTGAAATAGTGAGATTGCTCCAAGGCTTAGCCTGTGTTTCAGAGCAAGTAGTTTCATTTTCTTCAGAGCAAATAGTTTGTTAA 2586 0.4462 MVSKSYSNLLELASGEAPSFGYMNRRIPRIMTVAGLISDVDDDPADSVCSDPSSSTAHRDRIIMVANQLPIRAQRRPDGNRSCWCFEWDENALLQLKDGLGDDDIEVIYVGCLKEEVHPSEQDEVSQTLLETFKCVPTFLPADQFTKFYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPVREEILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHMGQLQSVLKMPQTEDKVCELIKQFSDQGRTLLLGVDDMDIFKGISLKLLAMEQLLIQHPEYQGKVVLVQIANPARGRGKDVKEVQAETKATVKRINETFGKPGYDPVILIEEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEMLDKVLGLASSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADSEKELRHEKHYRYVSTHDVGYWARSFLQDLERTCRDHVRRRWWGIGFGLSFRVVALDPNFKKLSMEHIVSAYKRTTTRAILLDYDGTLMPQSSTIDKSPSSKSIEILSSLCRDKNNMVFLVSARSRKMLSEWFSSCENLGVAAEHGYFLRMRRDEEWETHVAATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNNVEVKPQGVSKGLVAKRLLSAMQEKGMYPDFVLCIGDDRSDEDMFEVITSSMGGPIAPRAEVFACTVCRKPSKAKYYLDDTTEIVRLLQGLACVSEQVVSFSSEQIVC 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2395g00021 861 Gene3D Glycogen Phosphorylase B; 317 534 - -
Vium2395g00021 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 315 - -
Vium2395g00021 861 Pfam Trehalose-phosphatase 600 834 IPR003337 GO:0003824|GO:0005992
Vium2395g00021 861 SUPERFAMILY HAD-like 597 845 IPR036412 -
Vium2395g00021 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 553 - -
Vium2395g00021 861 Gene3D Glycogen Phosphorylase B; 53 316 - -
Vium2395g00021 861 Gene3D - 730 857 IPR023214 -
Vium2395g00021 861 Gene3D - 596 729 IPR023214 -
Vium2395g00021 861 FunFam Alpha,alpha-trehalose-phosphate synthase 317 534 - -
Vium2395g00021 861 CDD HAD_TPP 598 839 - -
Vium2395g00021 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 596 714 - -
Vium2395g00021 861 NCBIfam HAD-IIB family hydrolase 599 801 IPR006379 -
Vium2395g00021 861 Pfam Glycosyltransferase family 20 61 550 IPR001830 GO:0003824|GO:0005992
Vium2395g00021 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 845 IPR001830 GO:0003824|GO:0005992
Vium2395g00021 861 NCBIfam trehalose-phosphatase 596 844 IPR003337 GO:0003824|GO:0005992
Vium2395g00021 861 CDD GT20_TPS 61 550 IPR001830 GO:0003824|GO:0005992
Vium2395g00021 861 FunFam Trehalose-6-phosphate synthase 10 728 854 - -
Vium2395g00021 861 FunFam Trehalose-6-phosphate synthase 2 681 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2395g00021 Vium-Chr2395 204317 208665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2395g00021 1 852 Trehalose Biosynthesis Gene Families AT1G68020 80.831 0.0 1453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2395g00021 K16055 - gmx:100818822 1654.42