Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2395g00015 ATGGCTTCCTTCATACTCATCTTCTTCTTCTTCTTCTTCCTCTTCAATCTTCAACCCTCTTTCTCCCAACAGCAATTCTCATCCTTCAACATCTCAAACTCCCCATGGCAACCGTCTCAGAACAGAACCCTTATCTCTGCCAACAAAAACTTCACTGCAGGCTTCTTTCCCGTCCCAAACTCCGACCTTTTCATCTTTTCCATTTGGTATTCTAAAGTCCCTGTCGACCCTCTTGTGTGGAGTGACACCACCCGAGTGAACAGCTCTGGCTCCCTTGTCATCACCTCAAAATTTGAACTTCTCCTCGATGGTTCACCCTTTCAAGGAACTGCCGACACTAATGCTTCCCGACTTGATCTGAAGGACAATGGAGAGTTGGTTTTTGGGAACTGGAGCAGCTTCAAGAACCCCGCCAACACCGTTTTGCCCAACCAGAGCTTCACAGGGATTGAGCTTCTCTCCAACAATGGGAAATTCAGGTTCACCAAGTCTCAGTTTCTGGTCCTCAACTCCTCCTCTGATCAGTACTATAGCACCCCGAATCCCTTGCTGAGCATGGATGATGCAGGGAAAATGAGTATGCAAGGTAACTCTTTTCTCACTTCAGATTACGGAGACCCCAGGTTCAGGAAAGTGGTCCTTGATGATGATGGGAATCTCAGGATCTATAGCTTCTACCCTGACCAGAATAACCAGTGGATTGAGGTTTGGAAAGGAATATGGGAGATGTGCAAGATCAAAGGCAAATGTGGGTCTAATTCAATTTGTGTGCCTGGAGAGGATTTGAACTCTTCTACTCGTTGTGATTGCCCATCTGGGTTCACCCCAAACCAAGGCGGGGCTGAAGATGGTTGCACAAGGAAAATCTCTCTCTCCCAAAGCACCCAATTTGTGAGGCTGGACTATGTGAACTTCACCAGTGATGGTAATCTGACCGAGATTAAAGCTGACAACTTCACCATCTGTGAGTCCGGTTGCTCAAGAGATAAAACTTGTCTTGGGTTTGGGTTCAAATATGATGGATTGGGCTACTGTGTGTGGGTGACTGGGACAAATCTTCGATTTGGGTACTGGTCACCAGGCACTGAGGGTGCCTTTTTTCTCAAACTTGATAAATCTGAGTCAACACCGTCCAACTTCATTGGCCTGACTGAGGTGATGCAAACCACATGCCCAGTGAACATAAGCCTGCCACTGCCCCCAAAGGACTCAAACACAACAGCCCGAAACATTGCCATAATATGCACACTTTTTGCTGCAGAACTCATAGCTGGGGTGGCCTTTTTCTGGTCTTTCCTGAAGAGGTACATCAAGTATAGGGACATGGCCACCACACTGGGCCTGGAGCTTCTCCCTGCTGGGGGTCCCAAGAGGTTCACCTACTCAGAAATCAAGGCTGCAACCAATGACTTCTCCAATCTCATAGGCAAAGGAGGCTTTGGAGATGTCTACAAAGGTGAGTTGCCAGACCACAGGGTGGTGGCAGTGAAGTGCCTCAAGAATGTCACAGGTGGAGATGCTGAGTTCTGGGCAGAAGTAACAATCATTGCCAGAATGCACCATCTCAACTTGGTGAGGCTGTGGGGGTTCTGTGCTGAGAAGGGTCAAAGGATACTAGTCTATGAACACATCCCCTGTGGCTCATTGGACAAGTACCTCTTCAGGGTCAACAAGTCTCACAGCAATAATAACAACCATCTTAAAGACCAATCAAGTCCAAACACACCACAGCAAAAGCCGGTTTTGGATTGGAGCATGAGATACAGAATAGCCCTTGGTGTGGCAAGGGCTATTGCCTACTTGCATGAGGAATGTTTGGAGTGGGTTTTGCACTGTGACATCAAGCCTGAGAACATCTTACTAGGTGATGATTTTTGCCCCAAGATTTCAGATTTTGGGCTGGCCAAGTTGAGGAAAAAGGAGGACATGGTGACCATGTCAAGGAGGAGAGGCACACCAGGGTACATGGCACCTGAATGGATCACAGCTGACCTAATCACTTCAAAAGCTGATGTGTATAGTTTTGGCATGGTGCTTTTGGAGCTTGTGAGTGGAATTAGGAACTTTGAGATTCAAGAATCTGTGCTTAGGAGTGAGGAGTGGTACTTCCCAGGTTGGGCCTTTGACAAGATGTTTAAGGAGATGAGAGTGGAGGAGATTTTGGATGCACAGATTAGGAATGCTTATGACAGCAGAACCCACTTTGACATGGTTAATAGGATGGTGAAAACTGCCATGTGGTGTCTTCAAGATAGACCTGAGTTGAGGCCTACTATGGGCAAGGTGGCCAAGATGTTGGAAGGGACTGTGGAGATCCTTGAGCCCAAGAAGCCCACCGTTTTCTTCCTTGGAGAAGAGTAG 2361 0.474 MASFILIFFFFFFLFNLQPSFSQQQFSSFNISNSPWQPSQNRTLISANKNFTAGFFPVPNSDLFIFSIWYSKVPVDPLVWSDTTRVNSSGSLVITSKFELLLDGSPFQGTADTNASRLDLKDNGELVFGNWSSFKNPANTVLPNQSFTGIELLSNNGKFRFTKSQFLVLNSSSDQYYSTPNPLLSMDDAGKMSMQGNSFLTSDYGDPRFRKVVLDDDGNLRIYSFYPDQNNQWIEVWKGIWEMCKIKGKCGSNSICVPGEDLNSSTRCDCPSGFTPNQGGAEDGCTRKISLSQSTQFVRLDYVNFTSDGNLTEIKADNFTICESGCSRDKTCLGFGFKYDGLGYCVWVTGTNLRFGYWSPGTEGAFFLKLDKSESTPSNFIGLTEVMQTTCPVNISLPLPPKDSNTTARNIAIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEHIPCGSLDKYLFRVNKSHSNNNNHLKDQSSPNTPQQKPVLDWSMRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADLITSKADVYSFGMVLLELVSGIRNFEIQESVLRSEEWYFPGWAFDKMFKEMRVEEILDAQIRNAYDSRTHFDMVNRMVKTAMWCLQDRPELRPTMGKVAKMLEGTVEILEPKKPTVFFLGEE 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2395g00015 786 SMART serkin_6 469 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2395g00015 786 PANTHER OS07G0415500 PROTEIN 4 781 - -
Vium2395g00015 786 Pfam Protein kinase domain 473 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2395g00015 786 SUPERFAMILY Protein kinase-like (PK-like) 452 767 IPR011009 -
Vium2395g00015 786 Pfam S-locus glycoprotein domain 205 277 IPR000858 GO:0048544
Vium2395g00015 786 Gene3D Transferase(Phosphotransferase) domain 1 547 777 - -
Vium2395g00015 786 FunFam S-receptor-like serine/threonine-protein kinase 441 543 - -
Vium2395g00015 786 Gene3D Phosphorylase Kinase; domain 1 443 543 - -
Vium2395g00015 786 ProSitePatterns Protein kinases ATP-binding region signature. 475 497 IPR017441 GO:0005524
Vium2395g00015 786 CDD STKc_IRAK 475 768 - -
Vium2395g00015 786 FunFam Serine/threonine-protein kinase 544 777 - -
Vium2395g00015 786 PIRSF SRK 1 786 IPR024171 GO:0004674
Vium2395g00015 786 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Vium2395g00015 786 CDD EGF 244 275 - -
Vium2395g00015 786 ProSiteProfiles Protein kinase domain profile. 469 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2395g00015 Vium-Chr2395 141734 144524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2395g00015 384 778 Receptor kinase-like Gene Family AT4G18250 36.829 8.82e-76 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium2395g00015 Pkinase 4.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2395g00015 - - gmx:100775518 1311.98