Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2395g00014 ATGGGTTTTGTTTCGTGGCTTGCTGTGTTGTTGTTGTTCTGTGTGGGGTTTGAGTGTGCGTGGTGTCAAGATGATGCTGTGATGAACAAATTGAAGAAGGCCATCAATGAACCCAGTGGTCTGCAATGGAATGACCCAGATGTGTGTAACTGGAAACATGTTAAGTGCAGCGCCATGAAGAGGGTTACTGCAATTCAAATTGGGGGACAGAGTTTGCAAGGTTCTCTGCCTAAGGAACTGGCGCAGCTCTCAGAGTTGACACGATTTGAGTGCATGAGCAATGACTTCACTGGGCCATTTCCTAACATGCCAAAGTCCCTTGAGGTTCTGCTCATCCACAACAACAATTTCCAGTCCTTACCGGGTGATTTCTTCACCGGCATGACCAATTTGCAGTATGTCAGCATTGGCTACAACCCTTTTTCCCAGTGGAGGATTCCTGATAGCCTCAAGGACTGTGTGGCTCTCAGGAGTTTCTCTGCAACCAGTGCCGGTTTGGTGGGGAAAATCCCAGATTTTTTTGGTAAAGATGGTCCCTTCCCAGGTTTGGTTTCTCTTATCTTGAGTTTTAATTCTCTTGAAGGAGGATTGCCTGCAACCTTTTCTGGGAGTTCTTTGGAGACACTTTGGGTGAATGGTCAGAAAAGTGATGGTAAACTCAATGGTACCCTTGATGTGTTAAAGAGCATGACGTATTTGAAACAAATTTGGGTGCACGGTAACTCGTTCACAGGTCCTATACCGGACTTCTCGAATCATGATCAGCTATATGACGTGAGCTTGAGGGACAACCAGTTAACTGGGGTTGTTCCACCCTCTCTCACCGCTCTCCCTGCTCTTAAAGTGGTGAATTTGACCAATAACTTACTTCAAGGCTCTCCTCCCTTGTTCAAAGATGGAGTGAAGGTTGATAATGATTTAGACAAGGGGATCAATAGTTTTTGCACAGTGGAGGCTGGTAAGCCATGCAGTCCTGTAGTGGATGCTTTACTTTCTGTTGTTGAACCTTTTGGATACCCTCTGAGACTGGCTGAAAGTTGGAAGGGGAATGACCCTTGTGGTCGAAACTGGTTGGGGATTGTTTGCTCAAATGGTAACGTTTCCGTCATCAACTTGCAGAGCATGAATCTCTCTGGCAACATTTCTCCCAGTTTTGCTTCGCTTACATCTGTGACAAAGCTGCTTCTTCCCAACAATGGCCTCACTGGTACCATACCAAGTGAACTCACCAGCATGCCTGGTCTGGTAGAATTGGATGTTTCGAATAATCAATTGCACGGCAAGGTGCCATCTTTTCGTGAGGGTGTAGTTGTTAAAACTGGTGGGAATCCTGATATTGGAAAGGATAAGCCTCAAGGCCCGCCTGGCTCAAATCCTGAGGGTAAATCTGGTGGTCAGGTTAAGAAAAATAATACTGGAGCAATTATTGGCACTGTGTTGGGAGGTATCAGTTTAATTGGTTTGGGGGCTTTGATATTTCTTATGTATGGTAGAAAACGTAAGCAAGCAGGCAAAGTTCAAGGTCCTAGTGCAATAGTGGTACATCCTCGTTATTCTGGGGATGGAAATAATCTAAAGATAAGTGTTGCAGATGCTAGTGCTGGTGTTAGTGTTGGTGGTAGTGGTGTAGGAGGAATTGGTGTACTTAGTCCAGCTAGTACTGCTCAACATGTGGAAGCTGGGAATATGGTTATTTCAATCCAAGTTTTGAGACAAGTTACGAACAATTTCAGTGAGGCAAACATATTGGGGAAAGGTGGTTTTGGCACTGTATACAAAGGGGAATTGTACGATGGAACAAAAATTGCAGTGAAAAGGATGGAATGTGGAATGATGGTTGAGAAGGGGCTCACTGAGTTTGAGTCTGAAATTGCAGTACTGACTAAGGTTCGACACAGACATCTGGTTGCATTGGAAGGCCACTGCTTGGATGGAAATGAGAAGCTTCTTGTGTATGAATACATGCCTCAGGGTCCTCTCAGTAAGCATCTATTTGACTGGAAAGAGCAAGGAATACAACCATTGGAATGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCCAGAGGTGTTGAATATCTTCACGGTTTGGCCCAGCAAATTTTTATCCATAGGGATCTAAAACCATCAAACATCTTGCTTGGGGATGATATGCGGGCCAAAGTCTCAGACTTTGGATTGGTTCGGCTGGCTCCAGAAGGACAGACCTCATTTGAAACCAGGCTTGCTGGAACTTTTGGATATTTGGCTCCAGAGTATGCAGTCACTGGACGAGTTACAACAAAGGTTGATGTTTACAGCTATGGAGTGATTCTGATGGAGATGATAACAGGAAGAAAAGCAATTGACAACAGCCAACCAGAAGAGAATGTCCACCTTGTTACATGGTTCAGGAGGATGCTACTGAACAAAGACTCTTTTGAAAAGATTATTGACCCCATAATGTGTATTGATGAGGAGGCCCTACCCAGCTGTAGGACTGTGGCTGAGTTGGCTGGCCACTGTTGTGCAAGAGAGCCTTACCAGCGTCCAGACATGAGCCATGTGGTGAATGTCTTGGCACCGCTTGTTGAGATTTGGAAGCCTTCTGAGACAGATGATGAAGACATTTATGGAATTGACTTAGACATGACCTTGCCTCAAGCACTCAGAAAATGGCAGGCTGTTGAAGGAAGGAACACCTTTGATACTTCTTCATCAATGCTTACCAGTGAAGAAAATACACAATCTAGCATACCAACAAGGCCATTTGGATTTGCTAATTCTTTTAATTCCTCTGATGGAAGATGA 2790 0.4466 MGFVSWLAVLLLFCVGFECAWCQDDAVMNKLKKAINEPSGLQWNDPDVCNWKHVKCSAMKRVTAIQIGGQSLQGSLPKELAQLSELTRFECMSNDFTGPFPNMPKSLEVLLIHNNNFQSLPGDFFTGMTNLQYVSIGYNPFSQWRIPDSLKDCVALRSFSATSAGLVGKIPDFFGKDGPFPGLVSLILSFNSLEGGLPATFSGSSLETLWVNGQKSDGKLNGTLDVLKSMTYLKQIWVHGNSFTGPIPDFSNHDQLYDVSLRDNQLTGVVPPSLTALPALKVVNLTNNLLQGSPPLFKDGVKVDNDLDKGINSFCTVEAGKPCSPVVDALLSVVEPFGYPLRLAESWKGNDPCGRNWLGIVCSNGNVSVINLQSMNLSGNISPSFASLTSVTKLLLPNNGLTGTIPSELTSMPGLVELDVSNNQLHGKVPSFREGVVVKTGGNPDIGKDKPQGPPGSNPEGKSGGQVKKNNTGAIIGTVLGGISLIGLGALIFLMYGRKRKQAGKVQGPSAIVVHPRYSGDGNNLKISVADASAGVSVGGSGVGGIGVLSPASTAQHVEAGNMVISIQVLRQVTNNFSEANILGKGGFGTVYKGELYDGTKIAVKRMECGMMVEKGLTEFESEIAVLTKVRHRHLVALEGHCLDGNEKLLVYEYMPQGPLSKHLFDWKEQGIQPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQTSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRKAIDNSQPEENVHLVTWFRRMLLNKDSFEKIIDPIMCIDEEALPSCRTVAELAGHCCAREPYQRPDMSHVVNVLAPLVEIWKPSETDDEDIYGIDLDMTLPQALRKWQAVEGRNTFDTSSSMLTSEENTQSSIPTRPFGFANSFNSSDGR 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2395g00014 929 Pfam Leucine rich repeat N-terminal domain 328 363 IPR013210 -
Vium2395g00014 929 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
Vium2395g00014 929 Gene3D Transferase(Phosphotransferase) domain 1 655 872 - -
Vium2395g00014 929 FunFam receptor protein kinase TMK1 655 872 - -
Vium2395g00014 929 SMART serkin_6 577 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2395g00014 929 Pfam Protein tyrosine and serine/threonine kinase 581 852 IPR001245 GO:0004672|GO:0006468
Vium2395g00014 929 Pfam Leucine rich repeat 106 159 IPR001611 GO:0005515
Vium2395g00014 929 SUPERFAMILY Protein kinase-like (PK-like) 558 862 IPR011009 -
Vium2395g00014 929 Gene3D Ribonuclease Inhibitor 326 450 IPR032675 -
Vium2395g00014 929 FunFam Leucine-rich repeat receptor-like kinase 325 449 - -
Vium2395g00014 929 MobiDBLite consensus disorder prediction 897 929 - -
Vium2395g00014 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672|GO:0006468
Vium2395g00014 929 Gene3D Phosphorylase Kinase; domain 1 549 654 - -
Vium2395g00014 929 Gene3D Ribonuclease Inhibitor 22 321 IPR032675 -
Vium2395g00014 929 FunFam receptor protein kinase TMK1 546 654 - -
Vium2395g00014 929 CDD STKc_IRAK 583 856 - -
Vium2395g00014 929 MobiDBLite consensus disorder prediction 438 468 - -
Vium2395g00014 929 PANTHER OSJNBA0070M12.3 PROTEIN 9 929 - -
Vium2395g00014 929 FunFam Receptor-like kinase TMK4 22 320 - -
Vium2395g00014 929 ProSitePatterns Protein kinases ATP-binding region signature. 583 605 IPR017441 GO:0005524
Vium2395g00014 929 SUPERFAMILY L domain-like 30 430 - -
Vium2395g00014 929 ProSiteProfiles Protein kinase domain profile. 577 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2395g00014 Vium-Chr2395 131629 136069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2395g00014 57 857 Receptor kinase-like Gene Family AT5G62230 28.181 5.62e-78 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vium2395g00014 PK_Tyr_Ser-Thr 7.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2395g00014 K00924 - gmx:100776064 1545.79