Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2395g00013 ATGTTTCTTGCAATCTCTTCTTTTGTAACTCTCCTTCTTTTGGCTTCTAATGAACCAGTGGTAGCACATACTCACTACCATGATACTCATCATTATCATCATCATCGTCGTAACCATCATGATCAAGACCATTCTCATCACAGTCGAAAACATTTTCATGATAAGTCAGCTTCTCCTCAGAGGATAATTACTGTTGATCAATCTGGTAATGGAGACTTCTACAAGATACAATCCGCCATTGATTCAGTCCCTTCCAACAACAAGCAGTGGATTCACATCAACGTCAATGCAGGCACATACAGGGAGAAGTTGAAGATCCCAGAAGACAAGCCTTATATAATGTTGAAAGGAATGGGAAAAGATAAGACTTTTGTCGAGTGGGATGACCATGATTCAAGTGCACAGAGTCCTACATTCTTAACCATGGCTAACGACATTGTGGTTAAGACCATTAGCTTCAGGAATTCTTTCAATGATCCAAAAAAGGGGACTCCGATGACACCTGCAGTGGCTGCAATGATAAGTGGAGACAGGTCATCTTTCTATAGTGTTGGCTTCCATAGTTTGCAAGACACTCTATGGGATGATAAAGGAAGACACTACTTTAATTCTTGCACCATAGAAGGTGCTATGGATTTCATCTTTGGTGCTGGTCAATCTTTATATGAGAGTTGTAGCATATCAGTTCGTGAAGCGTATCCAGGTAAAGCAATCATTGGTTTCATCACAGCGCAAGGGAGAATGAATGCAGACGATGAAAATGGTTTTGTTTTCAAGAACTGCAACATCCATGGAGTTGGTAAAACATACTTGGGAAGACCATGGAGAGCTTTTGCCAGAGTTCTTTTCTACAAAACAACAATGTCTTCCATCATTCAACCACTTGGTTGGCAGCCATGGAATCCCACTGCCGATGTAGGGGGAGTGGAATTCTCAGAGTATGATAATATGGGTCCTGGTTCGTCCTTGTCTGGGAGAGTGAGTTGGTTGAAGAAATTGGATTCGTCAACTCTCATGAAAATGACAAGTACACAATTCGTGGACCCTGAAGGTTGGCTCAAGACTCATCACATGTTATAA 1080 0.4139 MFLAISSFVTLLLLASNEPVVAHTHYHDTHHYHHHRRNHHDQDHSHHSRKHFHDKSASPQRIITVDQSGNGDFYKIQSAIDSVPSNNKQWIHINVNAGTYREKLKIPEDKPYIMLKGMGKDKTFVEWDDHDSSAQSPTFLTMANDIVVKTISFRNSFNDPKKGTPMTPAVAAMISGDRSSFYSVGFHSLQDTLWDDKGRHYFNSCTIEGAMDFIFGAGQSLYESCSISVREAYPGKAIIGFITAQGRMNADDENGFVFKNCNIHGVGKTYLGRPWRAFARVLFYKTTMSSIIQPLGWQPWNPTADVGGVEFSEYDNMGPGSSLSGRVSWLKKLDSSTLMKMTSTQFVDPEGWLKTHHML 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2395g00013 359 Gene3D - 56 359 IPR012334 -
Vium2395g00013 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 52 354 - -
Vium2395g00013 359 SUPERFAMILY Pectin lyase-like 58 355 IPR011050 -
Vium2395g00013 359 MobiDBLite consensus disorder prediction 27 54 - -
Vium2395g00013 359 FunFam Pectinesterase 57 357 - -
Vium2395g00013 359 Pfam Pectinesterase 63 348 IPR000070 GO:0030599|GO:0042545
Vium2395g00013 359 MobiDBLite consensus disorder prediction 27 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2395g00013 Vium-Chr2395 108299 110545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2395g00013 56 300 Carbohydrate Esterase AT2G19150 42.276 4.62e-73 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2395g00013 - - gmx:100812950 406.757